Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4310g00005 ATGTCGCGTTCTCTCCGCAAAGCTACCGGCGTCAGCGCAATCTCTCCTTTAACATTTCAACATCTGATTTGTGTTCAAACCCAGTGGTTTTCATCGAGGTATGCTTATTCAACCTCTGCCAATGGGCATTCTTTCACCGTCTCATATCTCATTGACACCTGTGGCTTATCACCCAAACAAGCTGCTTCAGCTTCTAAGTGTGTCAGCTTCGAAACGCGGGATAAACCTGATTTGGTTATCAATTTCCTTAAAAGTCATGGATTCTCTCAGCCCCAGATTATTCGCTTCATTACTGACACCCCATCGTCTCTCCGATATGATCCTGAGAAAACCTTTCTGCCCAAAATTGAATTTTTTAAATCCAGAGGCTTTTCGAGCTTGGATATCCCTAAGCTCATATGTAGTTATCCTAGAATCATGTCAAGAAGCTTAAGGAAGCAGCTCATTCCTTCCTTTAACTTCTTTCGAGATGTGTTTCAATCTGACGACAAGCTCATTAAAACTCTTCGAATTTACTCGGGCATTCTTGTTGATGCCAACACAATTGCCCGGCCTAATATGGAGCTATTGCGAGAAGCAGGAGTTCCTGAATCAAATGTCATCAAATTTTTGCAATATAATCCTAGGACATTAACTGCAAGTCCTAATGTGCTTAAGGACATTGTGGAAGAAGTGAATAATATTGGGATCAATCCTTTGAAGTATCAATTTCTTATGGCTGTTCATGTGTTCTTCTGTCTAAGCAAATCCTCATTGGCAAAGAGAGCTGATGTTTATAAAAAGTGGGGTTGGTCTGACCATGACATTCTTGTGGCATTTAGAAAGTTTCCTCTCTGTATGGTAGCAGCAGAGGATAAGATCGATGCAATAATGGAGTTTCTTGTCCATAAATTGGGCTTTGAGTCTTCTACTGTTAGCAAATATCCTACAGTTTTTACAATGAGTTTCAGAAGGCGAATAGTTCCGAGAGGTGCTGTCATTCAAGCTCTGTTGTCAAGGGGTCTAATGAAAAAGAAAACATTGTTAACAAAATTTGTATATAGTGAAAGTTATTTTTTGAGGAAGTTTGTCCTTTGTCATGGGCAGGAAGCTACTGAATTATTAGAGTTGTATCAGTCTAAACTGCATCTTGCAAGGCAAATGAAGAATGGAAAGGTTTGTTTAGGTGAGTTGAGTCTGAAGGCTAACTTAGGCCAGGGAAGCATCTCTTCTTCTTTCCATTTTTTTAAATTTGCTATGGCTATACCAAGAATTAAGTTCAAGACCCCAACAGAGTCACAGAGGAGCTCCATTGTTCCAGAAAGGGGGAGTACTTTCCCAATTCAAAAACATTCCGAAGACAATGAGGCTGTGGTAAACATTGTTAAGAGCGATCGGTTTTCGGAAGCACATTATCAACGCAACCTCTCCTTCAAGATTTCAACATCTGCTAAACAAGCTGCTTCCGCTTCTGAGCGCGTCAGCTTCGAAACGCGAGATAAGCCAGATTTAGTTATCAATTTCCTGCAAAAACATGGACTTTCTCAATCCCAGATTGCTCGTTTCATTAGACATGATCCATTGATTCTTCGATGTGACCCTGACAAAACCCTTCTGCCCAAGATTGAGTTTTTAAAATCCATGGGTGTTTCGAGCTCAAGCATCCCTAAGCTCTTGTGCAGTTCTCCTGCCATCATGCGGAGAAGCCTAAGCAATCAGCTCATTCCTTCCTTTGATTTCTTCCGGGTGGGTTGGTCTGACCATGACATTCTCGCGGCATTTAGGAAGTACCCCTTTTGTATGACCGTGGCAGACGATAAGATTGATGCAGTAATGGAGTTTCTTGTCCACAAATTGGGCTGTGAGCCTTCCACCATTAACAAAAATCCTTCTGTTTTGGCATTGAGTTTGAAACGGCGAATTATTCCCAGAGGTGCTGTCATTCAAGCTCTGTTGTCAAAGGGTCTGATAGAAAGAAAAGCATTG 1965 0.4137 MSRSLRKATGVSAISPLTFQHLICVQTQWFSSRYAYSTSANGHSFTVSYLIDTCGLSPKQAASASKCVSFETRDKPDLVINFLKSHGFSQPQIIRFITDTPSSLRYDPEKTFLPKIEFFKSRGFSSLDIPKLICSYPRIMSRSLRKQLIPSFNFFRDVFQSDDKLIKTLRIYSGILVDANTIARPNMELLREAGVPESNVIKFLQYNPRTLTASPNVLKDIVEEVNNIGINPLKYQFLMAVHVFFCLSKSSLAKRADVYKKWGWSDHDILVAFRKFPLCMVAAEDKIDAIMEFLVHKLGFESSTVSKYPTVFTMSFRRRIVPRGAVIQALLSRGLMKKKTLLTKFVYSESYFLRKFVLCHGQEATELLELYQSKLHLARQMKNGKVCLGELSLKANLGQGSISSSFHFFKFAMAIPRIKFKTPTESQRSSIVPERGSTFPIQKHSEDNEAVVNIVKSDRFSEAHYQRNLSFKISTSAKQAASASERVSFETRDKPDLVINFLQKHGLSQSQIARFIRHDPLILRCDPDKTLLPKIEFLKSMGVSSSSIPKLLCSSPAIMRRSLSNQLIPSFDFFRVGWSDHDILAAFRKYPFCMTVADDKIDAVMEFLVHKLGCEPSTINKNPSVLALSLKRRIIPRGAVIQALLSKGLIERKAL 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4310g00005 655 SMART mt_12 513 544 IPR003690 GO:0003690|GO:0006355
Pral4310g00005 655 SMART mt_12 130 162 IPR003690 GO:0003690|GO:0006355
Pral4310g00005 655 SMART mt_12 201 231 IPR003690 GO:0003690|GO:0006355
Pral4310g00005 655 SMART mt_12 584 615 IPR003690 GO:0003690|GO:0006355
Pral4310g00005 655 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Pral4310g00005 655 SMART mt_12 235 265 IPR003690 GO:0003690|GO:0006355
Pral4310g00005 655 SMART mt_12 302 336 IPR003690 GO:0003690|GO:0006355
Pral4310g00005 655 SMART mt_12 549 581 IPR003690 GO:0003690|GO:0006355
Pral4310g00005 655 SMART mt_12 616 650 IPR003690 GO:0003690|GO:0006355
Pral4310g00005 655 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Pral4310g00005 655 Gene3D Transcription termination factor 3, mitochondrial 574 654 IPR038538 -
Pral4310g00005 655 Gene3D Transcription termination factor 3, mitochondrial 465 573 IPR038538 -
Pral4310g00005 655 Gene3D Transcription termination factor 3, mitochondrial 161 368 IPR038538 -
Pral4310g00005 655 Coils Coil 652 655 - -
Pral4310g00005 655 PANTHER CGI-12 PROTEIN-RELATED 468 575 IPR003690 GO:0003690|GO:0006355
Pral4310g00005 655 Pfam mTERF 80 230 IPR003690 GO:0003690|GO:0006355
Pral4310g00005 655 Pfam mTERF 473 652 IPR003690 GO:0003690|GO:0006355
Pral4310g00005 655 Pfam mTERF 186 352 IPR003690 GO:0003690|GO:0006355
Pral4310g00005 655 FunFam Mitochondrial transcription termination factor-like 144 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4310g00005 Pral-Chr4310 28606 37796 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pral4310g00005 mTERF 5.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4310g00005 K15031 - qsa:O6P43_003532 371.703