Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4309g00051 ATGGATACCAATTATCATGGCTTACCTCCCCTCAAGAGATTCAGACTCATCCAACAGCAACAAGAGCTCCAGAATCAACAGCGACATCACAATCACGGTCGCAAAACTCAGGATGAAGGCGCCAGTGTCTCTGGCTCAACCTTACCGGCAAAGAAGCGTAAAGAATCTCGAGATTCAACATTTCTTTCTGATTCGGCAGTTTCAGTTTGTGTCAACACTTATTCGTTACCGGCTAAGAAACGGGTATGGGCTCTTCAACCTGATTTTGGTTCCGATGTCGGCGTTTCTTCTATTGACCTTAATGTTGAATACAAACCATCGATTGAGGAAGAAGTAAAATCAATAGATGATGAAGCGAATGATACTGAAATTCCACCTGTAGCAAATTCCCTCGATGTTGAAAATGAGAATGAGAATGAAATTCAAAATACTGAAGATGTTGATGAAGATGATGAGGATGGGATTGTATGTGCTGTATGTCAAAGCACAGATGGGGATCCATCAGATCCAATTGTTCTCTGTGATGGGTGTGATCTAATGGTTCACGCCGCATGCTATGGCAATCCGCTTGTAAAAGGAATTCCAGAGGGTGATTGGTTCTGTGAAACATGCAGAGTTTCATCGTCTTCTGAAACTAAGAATGATGATGAAAACAACATTTCTTGTTGTCTCTGTCCTGCAAAGGAAGGGGCTATGAAACCTACTGTAGATGACCGGTGGGCCCATATTGTGTGTGCTCTTTTAGTGCCTGAGGTGTTTTTTAAGGACCCAGAAGGAAGAGAAGGGATTGATTGCTCAAAGGTTCCCAAGAAGAGGTGGTCTGAGAAGTGTTACATTTGTGAATCTTCAAATGGGTGTGCCATTGTGTGTTCTGAGATCAAGTGTCCTTTGGCATTTCATGTCACCTGTGGATTGAAAGAGGATCTTAGCATCGAGTATCGTGAAGGGAAGAAGAGCACTACCATCGTTGCTGGTTTCTGCAGAGGCCACACTGAATTATGGAGAAAGCAACAGCTATCTGGAAAATACAAAATCGTTGCTGAAGAAAACAAGTAG 1056 0.428 MDTNYHGLPPLKRFRLIQQQQELQNQQRHHNHGRKTQDEGASVSGSTLPAKKRKESRDSTFLSDSAVSVCVNTYSLPAKKRVWALQPDFGSDVGVSSIDLNVEYKPSIEEEVKSIDDEANDTEIPPVANSLDVENENENEIQNTEDVDEDDEDGIVCAVCQSTDGDPSDPIVLCDGCDLMVHAACYGNPLVKGIPEGDWFCETCRVSSSSETKNDDENNISCCLCPAKEGAMKPTVDDRWAHIVCALLVPEVFFKDPEGREGIDCSKVPKKRWSEKCYICESSNGCAIVCSEIKCPLAFHVTCGLKEDLSIEYREGKKSTTIVAGFCRGHTELWRKQQLSGKYKIVAEENK 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4309g00051 351 ProSiteProfiles Extended PHD (ePHD) domain profile. 219 331 IPR034732 -
Pral4309g00051 351 ProSiteProfiles Zinc finger PHD-type profile. 154 207 IPR019787 -
Pral4309g00051 351 Pfam PHD-zinc-finger like domain 221 321 - -
Pral4309g00051 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 333 IPR013083 -
Pral4309g00051 351 SMART PHD_3 156 205 IPR001965 -
Pral4309g00051 351 SMART PHD_3 276 331 IPR001965 -
Pral4309g00051 351 CDD PHD_BRPF_JADE_like 156 204 - -
Pral4309g00051 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 211 IPR013083 -
Pral4309g00051 351 MobiDBLite consensus disorder prediction 20 59 - -
Pral4309g00051 351 Pfam PHD-finger 156 206 IPR019787 -
Pral4309g00051 351 SUPERFAMILY FYVE/PHD zinc finger 143 207 IPR011011 -
Pral4309g00051 351 PANTHER PHD FINGER PROTEINS 80 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4309g00051 Pral-Chr4309 557728 559525 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4309g00051 20 349 C2H2 Transcription Factor Family AT3G14740 55.718 2.35e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral4309g00051 zf-HC5HC2H_2 2.2e-29 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4309g00051 K11380 - qsa:O6P43_001103 455.292