Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4309g00010 ATGGCTGCGGTTGCTGAGATTTCCCTAGACGCAGCAGCTGCGAACAAGTTGGACTCAAATTCCAAGTCCGAACCCGAATTCAATGTGCAAAAGCTCGTCGATATGTTCACTAAGCTGAATCCTTTGGCGAAAGAGTTTGTCCCTTCGAGATATTCTCACCATGATCATTTCCATCAGGGCTATCATCAGCTCTCGCCGAACAATTTTCTGGGCGGAGATATTACGGCAGCTGATGTTAATCACCAAAATTATCGAAGGAGAAGAACTAATTATAGCCAGGGGAGAAGGTCCAATGGAAGAGTGCACAAGGCTCAGAGAGAAGATAGCATTAGGAGGACAGTATATGTTTCTGATATAGATCAGCAGGTTACTGAGGAGCGGCTTGCTGCCTTATTTACTAGTTGTGGACAAGTTATTGACTGCCGCATTTGTGGTGATCCACATTCAATTCTTCGTTTTGCATTTGTGGAGTTTGCAGATGAGCAAGGTGCAAGAGCAGCTTTAAACCTTGGTGGCACTGTGCTTGGGTACTATCCAGTTAGGGTCCTTCCTTCCAAAACTGCAATCCTTCCTGTGAATCCTACATTCCTCCCCAGGTCTGAGGATGAGCGGGAAATGTGTAGCAGAACTGTCTACTGTACAAATATTGATAAAAAGATTTCTCAAGCTGAAGTGAAGAACTTTTTTGAAACAGCTTGTGGTGAGGTTACCCGCTTGAGGCTTTTGGGAGATCATGCTCATTCAACTCGAATTGCTTTTGTAGAATTCGCAATGGCCGAAAGTGCCATTATTGCTCTGAATTGTAGTGGGATGCCCTTAGGAAGCCAACCTATCAGGGTAAGTCCTTCAAAGACACCTGTGAGGCCAAGAATGCCCCATCCAACTCCCCATTAA 894 0.4508 MAAVAEISLDAAAANKLDSNSKSEPEFNVQKLVDMFTKLNPLAKEFVPSRYSHHDHFHQGYHQLSPNNFLGGDITAADVNHQNYRRRRTNYSQGRRSNGRVHKAQREDSIRRTVYVSDIDQQVTEERLAALFTSCGQVIDCRICGDPHSILRFAFVEFADEQGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKISQAEVKNFFETACGEVTRLRLLGDHAHSTRIAFVEFAMAESAIIALNCSGMPLGSQPIRVSPSKTPVRPRMPHPTPH 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4309g00010 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 176 IPR000504 GO:0003723
Pral4309g00010 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 278 IPR000504 GO:0003723
Pral4309g00010 297 CDD RRM2_CID8_like 205 286 IPR034825 -
Pral4309g00010 297 Pfam Ataxin-2 C-terminal region 35 49 IPR009818 -
Pral4309g00010 297 SUPERFAMILY RNA-binding domain, RBD 92 188 IPR035979 GO:0003676
Pral4309g00010 297 SMART rrm1_1 210 281 IPR000504 GO:0003723
Pral4309g00010 297 SMART rrm1_1 113 183 IPR000504 GO:0003723
Pral4309g00010 297 FunFam Polyadenylate-binding protein-interacting protein 10 203 281 - -
Pral4309g00010 297 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 35 290 - -
Pral4309g00010 297 SUPERFAMILY RNA-binding domain, RBD 200 291 IPR035979 GO:0003676
Pral4309g00010 297 CDD RRM1_CID8_like 110 189 IPR034823 -
Pral4309g00010 297 MobiDBLite consensus disorder prediction 277 297 - -
Pral4309g00010 297 Gene3D - 197 290 IPR012677 -
Pral4309g00010 297 Gene3D - 75 188 IPR012677 -
Pral4309g00010 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 285 IPR000504 GO:0003723
Pral4309g00010 297 FunFam Polyadenylate-binding protein-interacting protein 11 77 189 - -
Pral4309g00010 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 187 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4309g00010 Pral-Chr4309 224251 230517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4309g00010 90 266 Eukaryotic Initiation Factors Gene Family AT1G34140 24.457 2.25e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4309g00010 - - qsa:O6P43_001153 466.848