Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4307g00001 ATGTGCTACAAGTCTAACATTAGGCTCACATGCATGTTGGAGAATGTAATGCTGCCAGTGGGAATTGGGTTTTTATCAATATGGTTGATTCAAATTATAATAAAAGGTGTGGAATCGATCAGGAAGAGGAAGAACAAGGTCTCAGATCAAGACACAGAGATTCATCCCACCGTGCTGGAGTATGGTTTGGCTTGCAAAACCAGTATATTTTGCTGCACTTTACTTCTTGCAGTTCATATCTTGTTGCTTCTGATGGTGGTAAAAGGTGAGACTCAGTGCAACTCAAAACTTGTGGTTTTTACATCAGAGACAGTTCTGGTATTAGCATGGGCAATCACATTGATATCAGTGTGCAAGATGCCCAAAGTCAATGTAAAGTTCCCTTGGATGATAAGATCATGGTGGGTTTGCAGTTTTTTTTTGTGTATTATCAACTTAGCCTTTCATAGCCACTTCAGAATGAGCAAAAAGAAACAGATTGGATTGAGGGAATATGCAGATTTGCTTGGCCTTCTTGCTTCAACGATTCTATTGGGCATTTCAATATGGGGAAGAACTGGGATCGTGTTGATTGCCACGGATGGAATCTCTGAGCCACTCTTGAGTGAGAAAAGTGGCAAGGATTCAGAATCTCTCAAAAGGGAATCTTTATATGGGAAATCTACTTTCCTTGAACTCATTACCTTCTCATGGCTCAATCCCTTGTTTGCGGTAGGGTATAAGAAGGCCCTTGAACAGAGTGACATTCCTGATGTTGCCATCGAAGATTCTGCGGAATTTCTATCTTCATCCTTTGATGAGAGCATAAGAAATGTCAAGGAGGCTGATGGGACCACAAATCCATCTGTCTATAAGGCGATCTATCTATTTGCTAGGAAGAAGGCTCTGATCAATGCATGTTTTGCAGTGGTAAGTGCAGCAGCATCATATGTTGGCCCATACCTAATCACTGACTTTGTGAGTTTCCTAGCCGAGAAGGGAAGCCTTGGGTTGAATGAAGGATACTTGTTGTCACTTGGATTCTTATGTGCCAAAATGATTGAGACAATAACTCAGAGGCAATGGATTTTTGGCGCTCGACAAGCAGGTCTTCGCCTTAGAGTGGCATTGATATCACACATATATAAGAAGGGCTTGAATCTATCTAGTAAATCGCGCCAAAGTCACAGCGGTGGTGAGATCATGAACTATATGAGTGTAGATGTGCAGAGAATCACAGACTTCATGTATTACATAAATGTCATATGGATGCTTCCAGTGCAAGTAACTTTAGCGGTCTGCATTTTGCACACGAACCTTGGCTTGGGTTCATTGGCTGCACTAGCTGCTACGCTGACAGTTATGGGTATGAACATACCTCTTACAAGAATACAGAAAAGATACCAATCTAAGATCATGGAGGCTAAGGATAATAGGATGAAAGCCACATCAGAAGTCCTTAGAAATATGAAGACCCTGAAACTTCAAGCTTGGGATACTGAATTCCAGAACAGGTTAGAAGAACTGAGGGCAACAGAATCCATCTGGTTATGGAAGTCATTAAGACAAGGAGCATTTTCTGCTTTTATTTTCTGGGGATCACCTACATTTATTTCCTTAGTAACCTTCTGGGTATGTATGTTGATGGGGATTGAACTAACAGCTGGAAGAGTTTTATCTGCATTCGCCACATTTCGGATGTTACAGGATCCTATATTTAACTTACCTGATTTACTCACGTCGGTCGCTCAAGGGAAAGTTTCGGTAGACAGAATTGCTTCTTATGTCAGGGAAGAGGAAGTTCAACATAATGCCATTGAGTATGTTCCAAGGGCAACACAGTTTGATATAGTTATTGAAAAAGGAAGATTCAGCTGGGATTCTGAGCCAAGCAATCCAACCCTTGATGGAATAGATTTAAGAGTCAAAAGAGGAATGAAGGTAGCACTTTGTGGGACTGTAGGTTCTGGAAAGTCTAGCCTACTTTCTAGCATTTTGGGCGAAATGTATAAGCAGTCTGGGACTGTGAAGATCGGTGGAACAAAAGCTTATGTTCCGCAATCACCATGGATATTGACTGGGAATTTTAGGGACAATATCACCTTTGGAAAGGAATACAATAGTGTCAAGTATGAGAAGACTATTGAAGCATGTGCATTGATAAAGGACTTTGAGCTATTCTCCTGTGGTGACCTGACAGAGATTGGAGAAAGAGGGATCAATATGAGTGGAGGACAGAAGCAGAGGATACAAATAGCACGTTCAGTATATCAAGATGCCGATATATATCTCTTTGATGACCCTTTTAGTGCTGTTGATGCTCATACTGGAAGCCACCTCTTCAAGGAGTGCCTTATGGGGGTTCTCAGAGAAAAAACTATACTTTATGTTACCCACCAAGTAGAGTTTCTTCCAGCGGCAGACCTTATTCTGGTGATGCAAAATGGAAGGATTGCACAAGCTGGAACATTTGAACAACTTCTAAAGCAAAATATTGGATTTGAAGTTTTAGTTGGAGCCCATAACCAAGCTTTAGAGTCAATTCTCATGGTTGAGAATTCAAGTAGAAAAACTCTAAACTCAGCACCCGAGGGTGAATCTAACGACAATTCTCAGTCAAATTCAGAACTTTCTCACACTCAACATAACATAGAGCAAGGAAGTCCGCCAGAGATCAATGAAAAAGAAGGTAAGCTTGTGCAAGATGAAGAAAGAGAAAGAGGAAGCATCTCAAGAGAAGTTTACTGGACCTATTTGACCACTGTCAAAGGGGGTGCTCTAGTTCCTCTCATACTTTTGGCTCAATCTTCATTCCAAGTACTTCAGGTTGCCAGTAACTATTGGATGGCTTGGGTTTGCCCTACATCAAGTGATGCCAAGCCTACATTTAAAATGGATTTCATACTACTTGTTTACATGGCACTTTCTGTTGGGAGTGCATTTTGCGTGCTCCTAAGAGCCATACTAGTGGCAAAAGCAGGACTTTGGACTGCACAGAAATTATTTATCAATATGCTGCATAGTATTCTTCGAGCACCAATGTCATTTTTTGATTCAACTCCACATGGCAGAATTTTGAACAGGGCCTCCACAGATCAAAGTGTGCTAGATTTGGAAATGGCAACCAAGTTAGGATGGTGTGCTTTCTCAATAATACAGATTCTGGGTACCATTGCAGTGATGTCACAGGTGGCATGGCAAGTATTTGTCATCTTCATTCCAGTAACTGCAGTCTGCGTATGGTATCAAAGATACTATACACCAACAGCAAGAGAACTGGCTCGCCTGTCACAAATACAAATAGCTCCAATTCTGCACCATTTTGCAGAATCATTGGCAGGAGTAGCATCAATTCGAGCTTTTGATCAAGAAGGCCGTTTTGTATATTCAAATCTTGAGCTCATTGACAGCTACTCAAAACCGTGGTTCCATAACGTATCTGCAATGGAATGGCTTTCTTACAGATTGAATTTACTATCCAATTTTGTTTTTGCCTTCTCACTGGTTTTGCTTGTGGTCCTCCCAGAAGGAATCATCAATCCAAGCATTGCAGGGTTGGCAGTAACTTATGGGATCAATTTGAATGTCCTGCAAGCTTCAGTCATATGGAATATATGTAATGCAGAAAATAAGATGATATCTGTTGAAAGAATTATTCAGTACTCAAATATCAAAAGTGAAGCAGCTCTTGTAATTGAAGATTCTCGGCCTCCAAACAACTGGCCTGAAATTGGAACAATATGTTTCAAAAATCTGCAGATACGTTATGCGGAACATCTGCCCTCTGTTCTGAAAAGCATCAATTGCACATTTCCGGGAAGAAAGAAAATTGGTGTCGTGGGACGAACTGGAAGTGGAAAATCAACCTTAATACAGGCCATTTTCAGGATTGTTGAACCTTGGGAAGGAAGCATCGTAATTGATGATTTGGATATATGCAAGATTGGTCTACATGACTTAAGGTTGAGGCTTAGCATCATTCCACAAGATCCCACAATGTTTGAAGGCACAGTTAGAGGAAACTTGGACCCACTAGAGCAACACTCCGACAAGGAAGTGTGGGAGGCTTTGGATAAATGTCAGCTTGGTCAGCTCGTGAGATCAAAGCAAGAGAAATTGCAAGCCTCAGTGGTTGAAAATGGAGAAAACTGGAGTGCAGGCCAAAGGCAACTATTTTGCCTTGGAAGGGCCTTACTGAAGAAGAGTAGCATACTTGTGCTGGATGAAGCAACGGCATCAGTTGATTCTGCAACAGATGGAGTGATACAGAAGATCATCGGTCAAGAATTCAAAGATAGAACTGTCGTCACAATAGCTCATCGAATCCACACTGTTATCGATAGCGATTTGGTTTTGGTTCTAAGTGATGGAAAAATCGCACAGTTCGATGCGCCATCGAAGTTACTTGAAAGAGAAGATTCCTTCTTTTCCAAACTCATAAGGGAGTACTCAAGAAGGTCACAAAGTTTCAATAGCTTGGCCACTCAAAATGGCCAATGA 4479 0.4124 MCYKSNIRLTCMLENVMLPVGIGFLSIWLIQIIIKGVESIRKRKNKVSDQDTEIHPTVLEYGLACKTSIFCCTLLLAVHILLLLMVVKGETQCNSKLVVFTSETVLVLAWAITLISVCKMPKVNVKFPWMIRSWWVCSFFLCIINLAFHSHFRMSKKKQIGLREYADLLGLLASTILLGISIWGRTGIVLIATDGISEPLLSEKSGKDSESLKRESLYGKSTFLELITFSWLNPLFAVGYKKALEQSDIPDVAIEDSAEFLSSSFDESIRNVKEADGTTNPSVYKAIYLFARKKALINACFAVVSAAASYVGPYLITDFVSFLAEKGSLGLNEGYLLSLGFLCAKMIETITQRQWIFGARQAGLRLRVALISHIYKKGLNLSSKSRQSHSGGEIMNYMSVDVQRITDFMYYINVIWMLPVQVTLAVCILHTNLGLGSLAALAATLTVMGMNIPLTRIQKRYQSKIMEAKDNRMKATSEVLRNMKTLKLQAWDTEFQNRLEELRATESIWLWKSLRQGAFSAFIFWGSPTFISLVTFWVCMLMGIELTAGRVLSAFATFRMLQDPIFNLPDLLTSVAQGKVSVDRIASYVREEEVQHNAIEYVPRDXTQFDIVIEKGRFSWDSEPSNPTLDGIDLRVKRGMKVALCGTVGSGKSSLLSSILGEMYKQSGTVKIGGTKAYVPQSPWILTGNFRDNITFGKEYNSVKYEKTIEACALIKDFELFSCGDLTEIGERGINMSGGQKQRIQIARSVYQDADIYLFDDPFSAVDAHTGSHLFKECLMGVLREKTILYVTHQVEFLPAADLILVMQNGRIAQAGTFEQLLKQNIGFEVLVGAHNQALESILMVENSSRKTLNSAPEGESNDNSQSNSELSHTQHNIEQGSPPEINEKEGKLVQDEERERGSISREVYWTYLTTVKGGALVPLILLAQSSFQVLQVASNYWMAWVCPTSSDAKPTFKMDFILLVYMALSVGSAFCVLLRAILVAKAGLWTAQKLFINMLHSILRAPMSFFDSTPHGRILNRASTDQSVLDLEMATKLGWCAFSIIQILGTIAVMSQVAWQVFVIFIPVTAVCVWYQRYYTPTARELARLSQIQIAPILHHFAESLAGVASIRAFDQEGRFVYSNLELIDSYSKPWFHNVSAMEWLSYRLNLLSNFVFAFSLVLLVVLPEGIINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERIIQYSNIKSEAALVIEDSRPPNNWPEIGTICFKNLQIRYAEHLPSVLKSINCTFPGRKKIGVVGRTGSGKSTLIQAIFRIVEPWEGSIVIDDLDICKIGLHDLRLRLSIIPQDPTMFEGTVRGNLDPLEQHSDKEVWEALDKCQLGQLVRSKQEKLQASVVENGENWSAGQRQLFCLGRALLKKSSILVLDEATASVDSATDGVIQKIIGQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGKIAQFDAPSKLLEREDSFFSKLIREYSRRSQSFNSLATQNGQ 1493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4307g00001 1493 SMART AAA_5 638 811 IPR003593 GO:0016887
Pral4307g00001 1493 SMART AAA_5 1267 1452 IPR003593 GO:0016887
Pral4307g00001 1493 Pfam ABC transporter transmembrane region 297 560 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4307g00001 1493 Pfam ABC transporter transmembrane region 933 1168 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4307g00001 1493 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 607 834 IPR003439 GO:0005524
Pral4307g00001 1493 Coils Coil 458 478 - -
Pral4307g00001 1493 CDD ABC_6TM_ABCC_D2 922 1216 IPR044726 GO:0140359
Pral4307g00001 1493 Pfam ABC transporter 629 763 IPR003439 GO:0005524
Pral4307g00001 1493 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 924 1204 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4307g00001 1493 Gene3D - 1223 1477 IPR027417 -
Pral4307g00001 1493 MobiDBLite consensus disorder prediction 850 897 - -
Pral4307g00001 1493 CDD ABCC_MRP_domain2 1239 1459 - -
Pral4307g00001 1493 SUPERFAMILY ABC transporter transmembrane region 292 593 IPR036640 GO:0005524|GO:0016020
Pral4307g00001 1493 MobiDBLite consensus disorder prediction 850 882 - -
Pral4307g00001 1493 FunFam ABC transporter C family member 5 885 1222 - -
Pral4307g00001 1493 Pfam ABC transporter 1258 1406 IPR003439 GO:0005524
Pral4307g00001 1493 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 296 577 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4307g00001 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 827 IPR027417 -
Pral4307g00001 1493 FunFam ABC transporter C family member 10 279 593 - -
Pral4307g00001 1493 FunFam ABC transporter C family member 3 1224 1476 - -
Pral4307g00001 1493 CDD ABCC_MRP_domain1 611 811 - -
Pral4307g00001 1493 CDD ABC_6TM_ABCC_D1 297 585 IPR044746 GO:0140359
Pral4307g00001 1493 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 220 1478 - -
Pral4307g00001 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1232 1471 IPR027417 -
Pral4307g00001 1493 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1243 1475 IPR003439 GO:0005524
Pral4307g00001 1493 MobiDBLite consensus disorder prediction 883 897 - -
Pral4307g00001 1493 ProSitePatterns ABC transporters family signature. 736 750 IPR017871 GO:0005524|GO:0016887
Pral4307g00001 1493 Gene3D - 609 840 IPR027417 -
Pral4307g00001 1493 FunFam ABC transporter C family member 5 596 843 - -
Pral4307g00001 1493 SUPERFAMILY ABC transporter transmembrane region 922 1221 IPR036640 GO:0005524|GO:0016020
Pral4307g00001 1493 Gene3D ABC transporter type 1, transmembrane domain 886 1222 IPR036640 GO:0005524|GO:0016020
Pral4307g00001 1493 Gene3D ABC transporter type 1, transmembrane domain 270 594 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4307g00001 Pral-Chr4307 22773 32283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4307g00001 594 869 Calmodulin-binding Proteins AT2G36910 27.241 9.23e-23 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4307g00001 - - gmx:100809749 2273.82