Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4296g00054 ATGGAGGAGACTTATCAGGGGATGTCTTTTGTGGGAGAGAACAGTCGTGGTAGTGGTGGTCTAGTACGTCCTCCTCAAGTGGTGATGAATATGCCTATAGTGACATCTCATCATCACCATCATCATCAAAGTGGTCATCATCATCCATTTATAAATCCTAATCCTAATACACACGCTGATTTAAACACTATTAATACTCTTCTCCTCCCCACACCTTGCACTAATAATAGTAGCTCTTTCTCTTCCTCCTTTGTTATGCTCTGCAACAACAACAACTTAAACAACAGCAACAGCAGCGACAACAATACCGGGTTAAGCTTTGGCTGTTGTTTCATGGACATCGTCGACCACAACATTAACAACACCGATGGTAGTTCCTCTTCTTGTTCTCCTGTGAAAGCCAGGATCATGGCTCATCCTCACTACCCTCGCCTCCTCGCTGCTTACGTCAATTGTCAAAAGGTGGGCGCACCGCCGGAAACGGTGGCGAGGCTAGATGAAGCATATGCGGCGGCGGTGGCGGCAATGGGCCGCAGCGGAGGTGGGTCAGGCAGCACCGGCGAAGATCCGGCGCTGGATCAGTTCATGGAGGCATACTGTGAGATGTTGACGAAGTACGAGCAGGAGCTTTCCAAACCCTTAAAGGAAGCTATGTTCTTCCTTCAGAACATCGAACGTCAATTCAAAGCTCTCACCCTTGATTCTCCGATCAACTTTGGTTGTAATGAGATTGCTGAAAGGACTGAATCATCAGAAGATGAGATGGATCTTGAAAACAGCAGAATTAGCATGATCGATCCGCAGGTGGAGGATAAGGAACTGAAGGATCAGCTTCTGAGGAAGTACAGTGGATACTTGGGTAGTCTGAAGCAGGAGTTCATGAAGAAGAGGAAAAAAGGGAAGCTGCCTAAAGAAGCAAGGCAACAATTACTGGATTGGTGGAACGGACACTATAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCACTTGCAGAATCAACAGGGCTGGACCAGAAGCAAATAAACAACTGGTTCATTAACCAGAGAAAACGTCACTGGAAGCCTTCAGAAGACATGCAGTTCCTGGTGGTGGATCCAATGCATCCTCCTCACTACTTCATGGACAACGTTCTGGGAACTCCATATCCCTTGGATTTCTCTCACACTATGCTCTGA 1179 0.4699 MEETYQGMSFVGENSRGSGGLVRPPQVVMNMPIVTSHHHHHHQSGHHHPFINPNPNTHADLNTINTLLLPTPCTNNSSSFSSSFVMLCNNNNLNNSNSSDNNTGLSFGCCFMDIVDHNINNTDGSSSSCSPVKARIMAHPHYPRLLAAYVNCQKVGAPPETVARLDEAYAAAVAAMGRSGGGSGSTGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMFFLQNIERQFKALTLDSPINFGCNEIAERTESSEDEMDLENSRISMIDPQVEDKELKDQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWNGHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFLVVDPMHPPHYFMDNVLGTPYPLDFSHTML 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4296g00054 392 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 54 362 - -
Pral4296g00054 392 ProSitePatterns 'Homeobox' domain signature. 331 354 IPR017970 GO:0000981|GO:0006355
Pral4296g00054 392 Gene3D - 291 362 - -
Pral4296g00054 392 SUPERFAMILY Homeodomain-like 295 372 IPR009057 -
Pral4296g00054 392 MobiDBLite consensus disorder prediction 1 22 - -
Pral4296g00054 392 Pfam Homeobox KN domain 313 352 IPR008422 GO:0003677|GO:0006355
Pral4296g00054 392 SMART KNOX2_2 182 233 IPR005541 GO:0003677|GO:0005634
Pral4296g00054 392 Pfam KNOX2 domain 186 232 IPR005541 GO:0003677|GO:0005634
Pral4296g00054 392 CDD homeodomain 305 357 IPR001356 GO:0003677
Pral4296g00054 392 SMART HOX_1 295 360 IPR001356 GO:0003677
Pral4296g00054 392 ProSiteProfiles ELK domain profile. 273 293 IPR005539 GO:0003677
Pral4296g00054 392 ProSiteProfiles 'Homeobox' domain profile. 293 356 IPR001356 GO:0003677
Pral4296g00054 392 Pfam KNOX1 domain 132 169 IPR005540 GO:0003677|GO:0005634
Pral4296g00054 392 Pfam ELK domain 273 294 IPR005539 GO:0003677
Pral4296g00054 392 SMART KNOX1_2 130 174 IPR005540 GO:0003677|GO:0005634
Pral4296g00054 392 MobiDBLite consensus disorder prediction 36 57 - -
Pral4296g00054 392 SMART ELK_2 273 294 IPR005539 GO:0003677
Pral4296g00054 392 FunFam Homeobox protein knotted-1-like 2 298 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4296g00054 Pral-Chr4296 310484 316365 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4296g00054 132 392 Homeobox Transcription Factor Family AT1G62360 74.812 5.77e-120 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pral4296g00054 KNOX2 6.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4296g00054 - - gmx:100805837 434.106