Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4296g00053 ATGGACATCGTCGACCACAACATTAACAACACCGATGGTAGTTCCTCTTCTTGTTCTCCTGTGAAAGCCAGGATCATGGCTCATCCTCACTACCCTCGCCTCCTCGCTGCTTACGTCAATTGTCAAAAGGTGGGCGCACCGCCGGAAACGGTGGCGAGGCTAGATGAAGCATATGCGGCGGCGGTGGCGGCAATGGGCCGCAGCGGAGGTGGGTCAGGCAGCACCGGCGAAGATCCGGCGCTGGATCAGTTCATGGAGGCATACTGTGAGATGTTGACGAAGTACGAGCAGGAGCTTTCCAAACCCTTAAAGGAAGCTATGTTCTTCCTTCAGAACATCGAACGTCAATTCAAAGCTCTCACCCTTGATTCTCCGATCAACTTTGGTTGTAATGAGATTGCTGAAAGGACTGAATCATCAGAAGATGAGATGGATCTTGAAAACAGCAGAATTAGCATGATCGATCCGCAGGTGGAGGATAAGGAACTGAAGGATCAGCTTCTGAGGAAGTACAGTGGATACTTGGGTAGTCTGAAGCAGGAGTTCATGAAGAAGAGGAAAAAAGGGAAGCTGCCTAAAGAAGCAAGGCAACAATTACTGGATTGGTGGAACGGACACTATAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCACTTGCAGAATCAACAGGGCTGGACCAGAAGCAAATAAACAACTGGTTCATTAACCAGAGAAAACGTCACTGGAAGCCTTCAGAAGACATGCAGTTCCTGGTGGTGGATCCAATGCATCCTCCTCACTACTTCATGGACAACGTTCTGGGAACTCCATATCCCTTGGATTTCTCTCACACTATGCTCTGA 846 0.4905 MDIVDHNINNTDGSSSSCSPVKARIMAHPHYPRLLAAYVNCQKVGAPPETVARLDEAYAAAVAAMGRSGGGSGSTGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMFFLQNIERQFKALTLDSPINFGCNEIAERTESSEDEMDLENSRISMIDPQVEDKELKDQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWNGHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFLVVDPMHPPHYFMDNVLGTPYPLDFSHTML 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4296g00053 281 Pfam Homeobox KN domain 202 241 IPR008422 GO:0003677|GO:0006355
Pral4296g00053 281 CDD homeodomain 194 246 IPR001356 GO:0003677
Pral4296g00053 281 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 26 251 - -
Pral4296g00053 281 Pfam ELK domain 162 183 IPR005539 GO:0003677
Pral4296g00053 281 FunFam Homeobox protein knotted-1-like 2 187 249 - -
Pral4296g00053 281 SMART ELK_2 162 183 IPR005539 GO:0003677
Pral4296g00053 281 ProSitePatterns 'Homeobox' domain signature. 220 243 IPR017970 GO:0000981|GO:0006355
Pral4296g00053 281 Pfam KNOX2 domain 75 121 IPR005541 GO:0003677|GO:0005634
Pral4296g00053 281 ProSiteProfiles ELK domain profile. 162 182 IPR005539 GO:0003677
Pral4296g00053 281 SMART HOX_1 184 249 IPR001356 GO:0003677
Pral4296g00053 281 ProSiteProfiles 'Homeobox' domain profile. 182 245 IPR001356 GO:0003677
Pral4296g00053 281 SUPERFAMILY Homeodomain-like 184 261 IPR009057 -
Pral4296g00053 281 SMART KNOX1_2 19 63 IPR005540 GO:0003677|GO:0005634
Pral4296g00053 281 SMART KNOX2_2 71 122 IPR005541 GO:0003677|GO:0005634
Pral4296g00053 281 Gene3D - 180 251 - -
Pral4296g00053 281 Pfam KNOX1 domain 21 58 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4296g00053 Pral-Chr4296 310484 316871 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4296g00053 21 281 Homeobox Transcription Factor Family AT1G62360 74.812 1.21e-121 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pral4296g00053 KNOX2 4e-21 No_clan