Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4296g00033 ATGGCCACCTTAACCCCAAGAATCCTGCTACTTTCATGCTTTCTTCTTCCATACTTGACCACAACCTTGTACGCAGATTCAACAGACAATTATCTCAATACTCCCGAGCTCAATTCAAGCTTTATTTCCCAAACTACTAAGAACCTTATCCTCAACGCCATAGACTCTTGCTGGAGAGCCAACTCAAACTGGGCATCAAATCGGCAAGCCCTAGCTGATTGTGCTGTTGGGTTTGGCAAAGATGCAATGGGAGGTAAGTTTGGGGCAATCTATGAGGTCACTGATGCCTCCGATGACCCTGTGAATCCTAAACCAGGGACACTTCGTTATGGTGTGATCCAAACTCGGCCTCTTTGGATAATATTCACCAGAGACATGGTTATTAGACTCAAGAACGAGCTAATAGTGAATAGCTATAAGACCATTGATGGCAGAGGAGCCAAGATGGAGATTGCTTATGGACCTTGCATTACGATTCAAGGTGTTAATCACGTCATTATACATGGGATTAGCATCCACGATTGTAAACCAGGAAAAGCCGGGATGGTTAGGAGTAGTGAAGAGCATGTGGGGCATCGGGGAGGATCAGATGGAGATGGCATTACCATATTTGCTTCTTCGAATATTTGGATCGATCATTGCTTCTTGGCTCGTTGCACAGATGGCCTCGTTGATGTTATTCATGCCTCAACTTCTATCACTATCTCTAACAATTACTTAACCCAGCATGACAAAGTGATGCTGCTAGGCCACAGTGATGAATATACAGCGGATAGAATAATGAAAGTGACAGTGGCCTTCAATCGTTTTGCCAGCGGCCTCATAGAGAGAATGCCAAGGGTGAGATTTGGGTATGCGCATGTAGTGAACAACCAATATGAAGAGTGGATCCAGTACGCCATTGGAGGCAGTGCCGACCCTACCATTTTAAGTGAGGGAAACTACTTCATAGCTCCAAACAACGCTGCTGCAAAACAGGTTACGAAGAGGGAAACAAATGATAAGAACTGGAATAAGTGGAAATGGAGGACATACAAGGATAAATTCATGAATGGAGCATATTTTGTTCCATCAGGATATGGAAGTTGTGCCCCTTATTATTCTGCTTCACAATCTTTTGTGGCTTCTCCTGCCTTCTTGGTCCCTCGCTTAACTCTCAACGCTGGTCCTCTTCATTGTGTCCTTGCCAAAGCTTGTTCATGA 1203 0.4439 MATLTPRILLLSCFLLPYLTTTLYADSTDNYLNTPELNSSFISQTTKNLILNAIDSCWRANSNWASNRQALADCAVGFGKDAMGGKFGAIYEVTDASDDPVNPKPGTLRYGVIQTRPLWIIFTRDMVIRLKNELIVNSYKTIDGRGAKMEIAYGPCITIQGVNHVIIHGISIHDCKPGKAGMVRSSEEHVGHRGGSDGDGITIFASSNIWIDHCFLARCTDGLVDVIHASTSITISNNYLTQHDKVMLLGHSDEYTADRIMKVTVAFNRFASGLIERMPRVRFGYAHVVNNQYEEWIQYAIGGSADPTILSEGNYFIAPNNAAAKQVTKRETNDKNWNKWKWRTYKDKFMNGAYFVPSGYGSCAPYYSASQSFVASPAFLVPRLTLNAGPLHCVLAKACS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4296g00033 400 Pfam Pectate lyase 131 316 IPR002022 -
Pral4296g00033 400 PRINTS Pollen allergen Amb family signature 74 91 IPR018082 -
Pral4296g00033 400 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Pral4296g00033 400 PRINTS Pollen allergen Amb family signature 370 393 IPR018082 -
Pral4296g00033 400 PRINTS Pollen allergen Amb family signature 97 122 IPR018082 -
Pral4296g00033 400 PRINTS Pollen allergen Amb family signature 133 149 IPR018082 -
Pral4296g00033 400 PRINTS Pollen allergen Amb family signature 197 218 IPR018082 -
Pral4296g00033 400 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Pral4296g00033 400 PRINTS Pollen allergen Amb family signature 340 364 IPR018082 -
Pral4296g00033 400 Gene3D - 51 392 IPR012334 -
Pral4296g00033 400 SMART amb_all 125 322 IPR002022 -
Pral4296g00033 400 SUPERFAMILY Pectin lyase-like 52 390 IPR011050 -
Pral4296g00033 400 PANTHER PECTATE LYASE 18-RELATED 29 394 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4296g00033 Pral-Chr4296 199431 201450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4296g00033 45 399 Polysaccharide Lyase AT1G11920 70.141 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4296g00033 K01728 - gmx:100803229 626.706