Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4296g00032 ATGGCCACCTCCACACAACTATTCTTCTTCCTTCCAGCAATATCTTTCCTACCACTTATAGCTTCAAGCTCATATCCCTACAGTATTCCCCAAACTACTAAGAACCTCGTCCTCAACACCATAGACTCTTGCTGGAGAGCCAACTCAAACTGGGCATCGTATCGCCAAGCCCTAGCTGATTGTGCTGTTGGGTTTGGCAAAGATGCCATTGGAGGTAAGTATGGAGCTATATATAAGGTCACTGATGCCTCCGATGACCCTGTGAACCCTAAACCAGGGACACTTCGTTATGGTGTGGTCCAAACACGGCCTCTTTGGATAATATTCGCCAAGGACATGGTTATTAGACTCAAGAATGAGCTTATAGTGAATAGCTATAAGACCATTGATGGTAGAGGAGCCAACGTGGAGATTGCTTATGGACCTTGCATTACGATTCAAGGTGTTAATCACGTCATTATACATGGGATTAGCATCCACGATTGTAAACCAGGAAAATCTGGTATGGTAAGAAGCAGTAGTGATCATGTAGGACATCGTCTAGGTTCAGATGGAGACGCCATTAGCATATTTGGTTCCTCAAATGTTTGGGTTGACCATTGCTTCCTTGCTCGTAGTGCCGACGGTCTCATTGATATAATTCACTCCTCAACTTCCATCACCATTTCTAACAATTACTTCACCCAGCACGATAAAGTGATGCTGTTAGGACACAGCGACCAATACAAAGAAGATAAGATAATGAAAGTGACAATAGCTTTCAACCATTTTGCCAGCGGCCTATATGAAAGAATGCCAAGGGTAAGATTTGGGTACGCCCATGTGGTCAACAACAGATATGATGGCTGGAAGATGTATGCCATCGGTGGCAGTGCTGAACCAACCATTCTGAGTGAAGGGAACTACTATATAGCTCCAAGTAACCCCAGTGGGAAACAGGTTACCAAGAGAATAGCGAAGAAAGACTGGAAGAATTGGAAATGGAGGACTTATAAGGATGCATTTGTGAACGGAGCCTATTTTGTTCCATCTGGGTATGGAACTTGTGCCCCTTACTATTCAAGTGCTCAAGCTTTTGTTGCTGCTTCAGCGTCCTTGGTGCCTGCATTAACCATTCATGCTGGTCCCCTGAGTTGTATTGTTGGGAAAGTTTGTTGA 1158 0.4421 MATSTQLFFFLPAISFLPLIASSSYPYSIPQTTKNLVLNTIDSCWRANSNWASYRQALADCAVGFGKDAIGGKYGAIYKVTDASDDPVNPKPGTLRYGVVQTRPLWIIFAKDMVIRLKNELIVNSYKTIDGRGANVEIAYGPCITIQGVNHVIIHGISIHDCKPGKSGMVRSSSDHVGHRLGSDGDAISIFGSSNVWVDHCFLARSADGLIDIIHSSTSITISNNYFTQHDKVMLLGHSDQYKEDKIMKVTIAFNHFASGLYERMPRVRFGYAHVVNNRYDGWKMYAIGGSAEPTILSEGNYYIAPSNPSGKQVTKRIAKKDWKNWKWRTYKDAFVNGAYFVPSGYGTCAPYYSSAQAFVAASASLVPALTIHAGPLSCIVGKVC 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4296g00032 385 Pfam Pectate lyase 118 303 IPR002022 -
Pral4296g00032 385 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Pral4296g00032 385 PRINTS Pollen allergen Amb family signature 326 350 IPR018082 -
Pral4296g00032 385 PRINTS Pollen allergen Amb family signature 61 78 IPR018082 -
Pral4296g00032 385 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Pral4296g00032 385 PRINTS Pollen allergen Amb family signature 356 379 IPR018082 -
Pral4296g00032 385 PRINTS Pollen allergen Amb family signature 84 109 IPR018082 -
Pral4296g00032 385 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Pral4296g00032 385 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Pral4296g00032 385 SUPERFAMILY Pectin lyase-like 39 376 IPR011050 -
Pral4296g00032 385 SMART amb_all 112 309 IPR002022 -
Pral4296g00032 385 Gene3D - 38 378 IPR012334 -
Pral4296g00032 385 PANTHER PECTATE LYASE 18-RELATED 34 383 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4296g00032 Pral-Chr4296 195519 197464 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4296g00032 9 385 Polysaccharide Lyase AT1G11920 69.816 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4296g00032 K01728 - gmx:100799106 593.578