Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4296g00001 ATGGGCTGTCACAGCAGCAAGGAGAAAAAATCAAAGGCGGAATTTAGTGGCTATGGATCAGCCACGGGTAGTGTTGGTAGTACCCATCAAAGTCACCACACTGTTCAGCCTCTTTCTACTCAAACCCAGACTCAGATTCGAACATCAGAATCCAATCCCCAGCAGCCGCCGCCATCGCAGCCGCCAGCGACTGTGCCAGCGAAACCTACTTCCCTGAATGTCAGACCACCGCAGCAGAAGCCAGAAGCTACGATTCTGGGAAAGCCTCTTGAAGATGTTAAGAAATTCTACACTCTGGGGAAAGAACTTGGGAGAGGGCAATTTGGGATTACCTATTTGTGTACTGAGAATTCCACTGGCCGCACTTACGCGTGCAAATCGATATTGAAGAGGAAGCTTGTGTCTAAAGCGGACAAGGAAGATATGAAGAGGGAAATTCAGATTATGCAGCATTTATCTGGGCAACCCAGCATTGTCGAGTTTAAGGGTGCTTATGAAGATAGATATTCTGTGCACCTCATAATGGAGCTTTGTGCCGGTGGGGAGCTATTTGATCGAATCATAGCTCAGGGTCACTACTCAGAGAGAGCTGCGGCATCAATTTGCAGAGCTATTGTTAATGTTGTGCACATTTGCCACTTCATGGGTGTGATGCATCGCGATCTAAAGCCTGAAAATTTTCTGCTTTCTAGCAAAAATGAGGGAGCAACGCTTAAGGCTACTGATTTCGGACTATCTGTATTCATTGAAGAAGGGAAGGTTTACCGCGATATGGTGGGCAGTGCCTATTATGTTGCTCCTGAGGTATTGCGTCGTAGTTATGGAAAAGAAATAGACATTTGGAGTGCAGGCATCATATTGTATATTCTCCTTAGTGGTGTACCTCCTTTTTGGGCTGAAAATGAAAAGGGAATATTTGATGCTGTATTGGAAGGCAAAATTGACTTTGAAAGTCAACCTTGGCCCTCGATATCAGATAGTGCTAAAGATTTAGTCAGGAAGATGTTGACACAGGACCCAAAGAAGCGAATTACTTCTGCACAAGTCCTTGAACACCCATGGATCAGAGAAGGCGGAGAGGCATCAGATAAACCAATTGACAGTGCAGTTCTGTCGAGAATGAAGCAATTCAGGGCAATGAATAAGCTCAAAAAGCTCGCGCTGAAGGTTATTGCTGAAAATCTTTCTGAAGAGGAGATTAAAGGTCTCAAAGCAATGTTCACCAATATGGACACTGACAATAGCGGCTCTATCACCTATGAAGAACTCAAGACAGGTTTGGCCAGGATTGGATCACAACTGTCCGAGGCTGAAGTGAAGCAACTTATGGAAGCTGCTGATGTTGATGGGAATGGAACGATTGACTATATCGAATTCATCTCAGCTACAATGCATAGGCACAGACTTGAGCGAGATGAGCACTTATACAAAGCATTTCAGTATTTTGATACGGACAACAGTGGGTATATTACTAGGGATGAATTGGAGACTGCTATGACACAGCATGGAATGGGTGACGAAGCGACAATTAAGGAAATAATATCCGAGGTGGATGCCGATAATGATGGGAGGATAAACTATGAGGAATTTTGCTCAATGATGAGGAGTGGGATGCAACACCAAGGACAACTTTTCTAA 1638 0.4444 MGCHSSKEKKSKAEFSGYGSATGSVGSTHQSHHTVQPLSTQTQTQIRTSESNPQQPPPSQPPATVPAKPTSLNVRPPQQKPEATILGKPLEDVKKFYTLGKELGRGQFGITYLCTENSTGRTYACKSILKRKLVSKADKEDMKREIQIMQHLSGQPSIVEFKGAYEDRYSVHLIMELCAGGELFDRIIAQGHYSERAAASICRAIVNVVHICHFMGVMHRDLKPENFLLSSKNEGATLKATDFGLSVFIEEGKVYRDMVGSAYYVAPEVLRRSYGKEIDIWSAGIILYILLSGVPPFWAENEKGIFDAVLEGKIDFESQPWPSISDSAKDLVRKMLTQDPKKRITSAQVLEHPWIREGGEASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKAMFTNMDTDNSGSITYEELKTGLARIGSQLSEAEVKQLMEAADVDGNGTIDYIEFISATMHRHRLERDEHLYKAFQYFDTDNSGYITRDELETAMTQHGMGDEATIKEIISEVDADNDGRINYEEFCSMMRSGMQHQGQLF 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4296g00001 545 SMART serkin_6 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4296g00001 545 Pfam Protein kinase domain 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4296g00001 545 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Pral4296g00001 545 SMART efh_1 402 430 IPR002048 GO:0005509
Pral4296g00001 545 SMART efh_1 438 466 IPR002048 GO:0005509
Pral4296g00001 545 SMART efh_1 509 537 IPR002048 GO:0005509
Pral4296g00001 545 SMART efh_1 474 502 IPR002048 GO:0005509
Pral4296g00001 545 ProSiteProfiles Protein kinase domain profile. 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4296g00001 545 FunFam Calcium-dependent protein kinase 1 99 182 - -
Pral4296g00001 545 ProSiteProfiles EF-hand calcium-binding domain profile. 470 505 IPR002048 GO:0005509
Pral4296g00001 545 SUPERFAMILY EF-hand 394 534 IPR011992 -
Pral4296g00001 545 ProSitePatterns EF-hand calcium-binding domain. 518 530 IPR018247 -
Pral4296g00001 545 PANTHER SERINE/THREONINE-PROTEIN KINASE 90 530 - -
Pral4296g00001 545 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Pral4296g00001 545 SUPERFAMILY Protein kinase-like (PK-like) 75 376 IPR011009 -
Pral4296g00001 545 FunFam calcium-dependent protein kinase 1 183 362 - -
Pral4296g00001 545 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Pral4296g00001 545 Gene3D - 363 541 - -
Pral4296g00001 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Pral4296g00001 545 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Pral4296g00001 545 ProSitePatterns Protein kinases ATP-binding region signature. 103 130 IPR017441 GO:0005524
Pral4296g00001 545 MobiDBLite consensus disorder prediction 1 82 - -
Pral4296g00001 545 FunFam Calcium-dependent protein kinase 1 363 538 - -
Pral4296g00001 545 Gene3D Transferase(Phosphotransferase) domain 1 183 362 - -
Pral4296g00001 545 MobiDBLite consensus disorder prediction 17 53 - -
Pral4296g00001 545 Pfam EF-hand domain pair 403 463 IPR002048 GO:0005509
Pral4296g00001 545 Pfam EF-hand domain pair 473 535 IPR002048 GO:0005509
Pral4296g00001 545 ProSitePatterns EF-hand calcium-binding domain. 483 495 IPR018247 -
Pral4296g00001 545 CDD STKc_CAMK 96 354 - -
Pral4296g00001 545 ProSiteProfiles EF-hand calcium-binding domain profile. 506 540 IPR002048 GO:0005509
Pral4296g00001 545 Gene3D Phosphorylase Kinase; domain 1 99 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4296g00001 Pral-Chr4296 5651 9740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4296g00001 1 545 EF-hand Containing Proteins AT4G04720 74.955 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pral4296g00001 Pkinase 7.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4296g00001 K13412 - gmx:100812843 890.567