Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4287g00016 ATGGCTGTTACATCTTTCGGAAGTACATCTGTTGCACAATGGGGAGTTCGTCCTCAGTTTTTCTTGAGATCCTGTTTGAGTGGAAAGGGTGTATCGTCTGGTTACGATGTGTCAAGCAGGGTTAGTTTAATGGCTTCCGTGAGTTCAAGTTTTTTGTCTCGGGGTTCCTTGCACCTCCTATTTGGCCTGGGTTCATCTCAAACATTACATCGTCACAAGGGATCAAGGTTGATAGTTAGAGCAGATACCGATTACTATTCTGTCCTTGGGGTGTCAAGAAATGCCAGTAAATCTGAAATTAAGAGTGCTTATCGTAAACTTGCTCGGAATTATCACCCGGATGTGAACAAAGAACCTGGAGCAGAACAGAAATTTAAGGAAATCAGCAATGCATATGAGGTCTTATCAGATGATGAGAAGAGATCCATATATGACACATATGGAGAGGCAGGGCTTAAAGGTTCTGGAATGGGCATGGGAGATTTCAGTAATCCTTTTGATCTGTTTGAGACGCTGTTTGAGGGCATGGGCATGAATCGTGGCATGAACAACAGAGGCTCTTGGAATGGAGCTGTTGATGGTGAAGATGAATATTACAGTCTTGTCTTGAACTTTAAAGAAGCAGTTTTTGGAGTAGAAAAAGAGGTAGAGATAAGCCGACTAGAGAATTGTGGAACTTGCAACGGTACTGGGGCTAAGCCTGGGACCACGCCAACCAGATGTGGTACCTGTGGAGGCCAAGGCAGGGTTGTCTCATCAACGAGGACACCGTTGGGTATTTTCCAGCAGTCAATGATATGCTCTTCGTGTAATGGAACCGGAGAAATTTCAACCCCTTGCAATACATGTTCTGGGGATGGTCGAGTGAGGAGAACAAAGCGTATAAGTCTGAAAGTTCCACCAGGTGTGGACTCTGGTAGCCGTTTAAGGGTCCGAAATGAAGGAAATGCTGGAAGACGAGGCGGTTCTCCGGGCGATCTTTTTGTTGTCATTGAAGTCATTCCAGATCCTGTTCTTAAGCGGGATGACACTAACATCCTATACACTTGTAAGGTGTCATACATTGATGCAATCTTGGGGACTACAATCAAAGTTCCTACCGTAGACGGAATGGTTGATCTAAAAATCCCAGCTGGGACCCAACCCAACACGACACTTGTCATGGCAAAGAAAGGTGTTCCCTTTCTTAATAAAAGCAGTATGAGGGGGGATCAATTGGTTCGTGTGCAAGTTGAAATACCTAAAAAACTAAACAGTGAAGAGAGGAAGCTTATTGAGGAGCTTGCTGATCTAAGCAAAGGCAAGGCTGCGGCAAGTAGGAGGTAA 1326 0.4472 MAVTSFGSTSVAQWGVRPQFFLRSCLSGKGVSSGYDVSSRVSLMASVSSSFLSRGSLHLLFGLGSSQTLHRHKGSRLIVRADTDYYSVLGVSRNASKSEIKSAYRKLARNYHPDVNKEPGAEQKFKEISNAYEVLSDDEKRSIYDTYGEAGLKGSGMGMGDFSNPFDLFETLFEGMGMNRGMNNRGSWNGAVDGEDEYYSLVLNFKEAVFGVEKEVEISRLENCGTCNGTGAKPGTTPTRCGTCGGQGRVVSSTRTPLGIFQQSMICSSCNGTGEISTPCNTCSGDGRVRRTKRISLKVPPGVDSGSRLRVRNEGNAGRRGGSPGDLFVVIEVIPDPVLKRDDTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPFLNKSSMRGDQLVRVQVEIPKKLNSEERKLIEELADLSKGKAAASRR 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4287g00016 441 Pfam DnaJ domain 84 145 IPR001623 -
Pral4287g00016 441 ProSiteProfiles dnaJ domain profile. 84 148 IPR001623 -
Pral4287g00016 441 CDD DnaJ_C 195 417 - -
Pral4287g00016 441 FunFam Chaperone protein dnaJ A6 chloroplastic 81 184 - -
Pral4287g00016 441 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 211 290 IPR036410 -
Pral4287g00016 441 CDD DnaJ 84 137 IPR001623 -
Pral4287g00016 441 ProSiteProfiles Zinc finger CR-type profile. 211 292 IPR001305 GO:0031072|GO:0051082
Pral4287g00016 441 Gene3D DnaJ domain 81 185 IPR036869 -
Pral4287g00016 441 FunFam Chaperone protein dnaJ 1, mitochondrial 334 441 - -
Pral4287g00016 441 Gene3D - 224 287 - -
Pral4287g00016 441 Pfam DnaJ C terminal domain 199 414 IPR002939 -
Pral4287g00016 441 PRINTS DnaJ domain signature 120 140 IPR001623 -
Pral4287g00016 441 PRINTS DnaJ domain signature 104 119 IPR001623 -
Pral4287g00016 441 PRINTS DnaJ domain signature 86 104 IPR001623 -
Pral4287g00016 441 PRINTS DnaJ domain signature 140 159 IPR001623 -
Pral4287g00016 441 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 42 437 - -
Pral4287g00016 441 SUPERFAMILY HSP40/DnaJ peptide-binding domain 339 425 IPR008971 GO:0006457|GO:0051082
Pral4287g00016 441 SUPERFAMILY HSP40/DnaJ peptide-binding domain 192 346 IPR008971 GO:0006457|GO:0051082
Pral4287g00016 441 CDD DnaJ_zf 224 287 IPR001305 GO:0031072|GO:0051082
Pral4287g00016 441 SUPERFAMILY Chaperone J-domain 80 178 IPR036869 -
Pral4287g00016 441 Gene3D - 194 329 - -
Pral4287g00016 441 SMART dnaj_3 83 140 IPR001623 -
Pral4287g00016 441 FunFam Molecular chaperone DnaJ 216 292 - -
Pral4287g00016 441 FunFam Putative Mitochondrial DnaJ chaperone 279 329 - -
Pral4287g00016 441 Gene3D - 334 441 - -
Pral4287g00016 441 Hamap Chaperone protein DnaJ [dnaJ]. 81 437 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pral4287g00016 441 MobiDBLite consensus disorder prediction 301 320 - -
Pral4287g00016 441 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Pral4287g00016 441 Pfam DnaJ central domain 224 287 IPR001305 GO:0031072|GO:0051082
Pral4287g00016 441 NCBIfam molecular chaperone DnaJ 84 430 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4287g00016 Pral-Chr4287 100771 107742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4287g00016 85 147 C2H2 Transcription Factor Family AT1G74250 43.478 1.05e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4287g00016 K03686 - gmx:100811006 710.679