Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4287g00012 ATGCAAAATTCCAACTCCGTTTCTCCGGCGTCGAGCAGCGTGACTCGAATCGATCGTGCTTTGGATTCGAATATCATCTCGGATCCAAGCGTTGCCTTTCAGAACCTCTCGACGGTTCGAGCGAGAATGAATTCTCTACAACGCTTTCTATCTGAATCTATCAGCACCAAAGCTTTTGTCAGCGAGGACCAGATGGATATGGTGTCGAACGAAATCGTCTCCGCTGTCCACCAGATTATCGTCAACGGCACCACCCTGGTCTCCTACTCTCAGAATTTCACGGCCGCCGGCTCGTCAACAGCCTCGGGAGACTTACCGGAGCCGTCAGATATGGTATGTTCGACGAGGCCGGGATCTGATCATTCTGGGACTGAGAAAGATAATTTAAAAATTGAGGTTATGGACGATGAAGAAGTGAAGGATGATGACGAAAATTGTGAGATCGTGGAGCTCGACGCGGTCGAATTGCTGGCGGAGCACATTCATTTCTGTGAAATCTGCGGGAAAGGATTCAGGCGTGATGCGAATTTGCGAATGCATATGCGAGCACATGGAAACCAATTCAAAACCCCCGAAGCGTTGGCGAAGAAACACTCTGATAAATCCGACGTCGTTCGTAGCAAAACGGTACGCTTCTCTTGCCCATTCGAAAGTTGCAATCGGAACAAGATGCACAAAAAATTCCGGCCTCTGAAATCGATCATTTGCGTGAAGAACCACTTCAAAAGAAGCCATTGTCCGAAAATGTATTCCTGCAATCGGTGCCACAAGAAGAATTTCTCAGTGCTTTCGGATTTAAAGAGCCATTTGAAGCACTGTGGGGAATCATCAAAGTGGAAGTGCTCCTGTGGGACCACATTTTCAAGGAAGGATAAATTGTTTGGTCACGTAGCTCTGTTTGATGGGCATATGCCAGTTCTTGCCGGGGATGAAGAAGAGAAAGGGAAGCAAATGGTAAAGGAGAATGATGAAGATATGAATATGCTGCTAAAGGAAGAACAACCAGGGCTAAATTATTTGGATGAGGATTTACCAGAAGGATTCTTTGACGATTTAGATGAATTTAGCAATTACTCGTTGGAGGAAGCTCTGGGCTTCTCTTAA 1104 0.462 MQNSNSVSPASSSVTRIDRALDSNIISDPSVAFQNLSTVRARMNSLQRFLSESISTKAFVSEDQMDMVSNEIVSAVHQIIVNGTTLVSYSQNFTAAGSSTASGDLPEPSDMVCSTRPGSDHSGTEKDNLKIEVMDDEEVKDDDENCEIVELDAVELLAEHIHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKKHSDKSDVVRSKTVRFSCPFESCNRNKMHKKFRPLKSIICVKNHFKRSHCPKMYSCNRCHKKNFSVLSDLKSHLKHCGESSKWKCSCGTTFSRKDKLFGHVALFDGHMPVLAGDEEEKGKQMVKENDEDMNMLLKEEQPGLNYLDEDLPEGFFDDLDEFSNYSLEEALGFS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4287g00012 367 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 22 327 IPR044300 GO:0010044|GO:0010447
Pral4287g00012 367 FunFam Zinc finger 45-like 159 185 - -
Pral4287g00012 367 SMART c2h2final6 212 245 IPR013087 -
Pral4287g00012 367 SMART c2h2final6 250 272 IPR013087 -
Pral4287g00012 367 SMART c2h2final6 162 184 IPR013087 -
Pral4287g00012 367 Gene3D Classic Zinc Finger 248 298 - -
Pral4287g00012 367 MobiDBLite consensus disorder prediction 97 127 - -
Pral4287g00012 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 189 IPR013087 -
Pral4287g00012 367 Gene3D Classic Zinc Finger 162 211 - -
Pral4287g00012 367 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
Pral4287g00012 367 SUPERFAMILY beta-beta-alpha zinc fingers 159 185 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4287g00012 Pral-Chr4287 72436 73886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4287g00012 134 311 C2H2 Transcription Factor Family AT1G34370 59.140 8.27e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4287g00012 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4287g00012 - - qsa:O6P43_023190 415.616