Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4287g00011 ATGGGAAGATCTCCTTTCAGTGATGAGAATGGTTTGAAGAAAGGACCTTGGACCCCTGAAGAAGATAACAAGCTTGTTCATTACATTCAGAAACATGGCCATGGAAGCTGGAGGTCTCTCCCCAAACTAGCTGGGCTTAACAGATGCGGCAAGAGTTGCAGGCTAAGATGGACGAACTACTTGAGACCAGACATAAAGAGAGGGAAGTTTTCCAAAGAAGAAGAAGAGAGAATTCTGAATCTGCATGCTATCCTGGGAAACAAATGGTCGGCAATTGCGAGGCACTTACCAGGTCGTACTGATAATGAAATAAAGAACTTCTGGAACACTCACCTGAAGAAGAAGCTGATTCAAATGGGTTACGATCCCATGACTCACCAACCACGAACTGATATCTTCTCTAGTCTCTCTCATCTCTTAGCTCTCGCCAACCTTAAGCAACTTCTGGATCATAATGCTTCCAGTCTTCAATTCCTGCAGCATCTTGTTCAACCTCGGACCAGTAGTCATCAAGCAAACACAAACGCTATGAACATCGACAGTTTCGCCCACTTGATGAATCCGTCACTTCATCAGTTAGACAACAACTTTGTCAATAATAATGACTCGTCCATGGCTTTTTCCCACATGCCTGAGTTAATCACTCATTCTTCTTCTTCTTCTGCCTATCAGACGCCTCCATTTATTAGCAAACAGGACATGGTTCAAATCCCAGAATATTGTACAGTGAACAACAAGGAAGAGAGTGGTTCTCCCAATAATTCCACGTGGCTTCAGTCGTGTGTAAGCACGCCGTCTCCTTCTTTTGTTCAGGCGGAGACTAAGACGCCGGCGACGGCGACAGTGACAGTGACTAATAATTGCATGGCCGATAACTGCTCTCCGGCTTGCGATTTCGGAGAAGTTGTTGGTCTTTGGCCTGAGTCAGAGCTGTTTCTAGAAGACCCTTTATTTCATGAGATTAATGCCTAG 972 0.4486 MGRSPFSDENGLKKGPWTPEEDNKLVHYIQKHGHGSWRSLPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSKEEEERILNLHAILGNKWSAIARHLPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRTDIFSSLSHLLALANLKQLLDHNASSLQFLQHLVQPRTSSHQANTNAMNIDSFAHLMNPSLHQLDNNFVNNNDSSMAFSHMPELITHSSSSSAYQTPPFISKQDMVQIPEYCTVNNKEESGSPNNSTWLQSCVSTPSPSFVQAETKTPATATVTVTNNCMADNCSPACDFGEVVGLWPESELFLEDPLFHEINA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4287g00011 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral4287g00011 323 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pral4287g00011 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral4287g00011 323 CDD SANT 69 112 IPR001005 -
Pral4287g00011 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 220 - -
Pral4287g00011 323 CDD SANT 16 61 IPR001005 -
Pral4287g00011 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pral4287g00011 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral4287g00011 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral4287g00011 323 SMART sant 13 63 IPR001005 -
Pral4287g00011 323 SMART sant 66 114 IPR001005 -
Pral4287g00011 323 Gene3D - 69 131 - -
Pral4287g00011 323 Gene3D - 11 67 - -
Pral4287g00011 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral4287g00011 323 FunFam Transcription factor MYB39 69 130 - -
Pral4287g00011 323 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4287g00011 Pral-Chr4287 49411 50657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4287g00011 1 201 MYB Transcription Factor Family AT5G10280 61.644 3.25e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4287g00011 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4287g00011 K09422 - qsu:112033310 339.347