Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4283g00051 ATGACGACTACACTTGCTTGGAGAATTGGTTCCAATAATGGCAGCAGCCTAGCTGTTAGTGAGATGGAAAGAAATGGCGAGGGGAACATTCCAGATTCAGAGCCCCTAACTCCACATTCTGTTTCGAAGATGGGATTGAGAGAACGCAGCAGCAGCATGGAGGATCCAGATGGGACATTAGCAAGTGTTGCCCAATGCATAGAGCAGCTGCGACAGAGCTCATCCTCTGCACAAGAGAAGGAGTACTCCTTGAGGCAGTTATTGGAGCTTATTGACATGCGTGAAAATGCATTCAGTGCTGTTGGATCTCATTCTCAGGCAGTACCAGTGCTTGTTTCTCTTCTCCGATCTGGTTCAGTGAGTGTGAAGATTCAGGCAGCAACTGTTTTGGGCTCCCTCTGTAAAGAAAATGAGCTTAGAGTGAAAGTGTTGCTTGGAGGATGCATTCCCCCATTGCTTGGGCTGCTTAAATCCAGTTCAGCTGAAGGTCAAGTTGCTGCTGCAAAGACTATTTATGCCGTCTCTCAAGGCGGCTCAAAAGACCATGTGGGATCAAAAATTTTTTCAACTGAAGGAGTGGTACCTGTGCTGTGGGAGCAGCTTCGGAAAGGGCTGAAGACTGGAAATGTAGTTGATGGTTTGTTAACTGGAGCCTTGAAAAACCTGTCCGGTAATACTGAGGGATTCTGGAGTACAACTATAAAAGCTGGTGGAGTAGACATACTAATGAAGTTATTGACTTCAGGGCATCCTAGCACTTTAGCTAATGTGTGCTTCTTACTTGCCAGTATGATGATGGAGGATGCATCTGTTTGTTCAAAGGTGTTGACTTCAGAGGCGACAAAACAACTCCTAAAATTATTAGGCCCTGGTAATGATGCCGCTATTAGAGCTGAAGCAGCTGGTGCTCTGAAAGCTTTGTCTTCTCAGTGCAAAGAAGCAAGGCGTGAGATAGCTAGTTCTAATGGAATTCCTGCTTTGATCAATGCTACCATAGCTCCTTCAAAGGAGTTCATGCAGGGTGAGCATGCGCAAGCACTGCAGGAAAATGCTATGTGTGCTCTAGCTAACATCTCTGGTGGTTTGTCTTATGTAATCTCCAGCCTTGGTCAAAGCCTTGAATCATGCACTTCAGCTACTCAAATTGCTGATACATTGGGGGCTTTAGCTTCAGCTCTTATGATATATGATAGCAATGCCGAAGCTACAAGAACATCGGATCCCTTGGTAGTTGAGCAAACATTACTCAAGCAATTCAAACCTCAATCGCCTTTTCTTGTGAAGGAACGAACAATTGAAGCTCTGGCTAGTTTGTATGGAAATCCTGTACTTTCAGTTAAGCTTGCAAATTCAGATGCAAAACATTTGCTAGTCGGATTAATAACTATGGCTGCCAATGAAGTGCAAGATGACCTCATAAGAGCACTCCTTACATTGTGCAACAATGAAGGCAGTCTTTGGCATGCCCTTCAGGGCCGTGAAGGAGTTCAGCTGTTGATATCTCTTCTAGGGCTTTCATCAGAACAGCAGCAAGAGTGTGCAGTTACTCTGCTATGTCTTCTATCTTATGAAAATGATGAAAGTAAATGGGCAATCACTGCTGCTGGTGGTATACCTCCATTAGTTCAAATTTTGGAGACAGGATCCACAAAAGCAAAAGAAGACTCAGCAAAAATCCTTACAAACCTGTGCAATCACAGTGAAGATATACGTGCTTGTGTGGAGAGTGCTAATGCTGTTCCTGCATTGTTGTGGCTATTGAAGAATGGTAGTCCAAATGGGAAGGAGATAGCAGCAAAAACCTTAAATCACTTAATTCATAAATCTGATACTACCACAATCAGTCAGCTTACGGCATTATTGACTAGTGATCTACCGGAATCCAAGGTCTATGTTTTGGATGCTTTGAGAAGTATGCTGTCAGTTGCTCCTCTCAGCGACATTCAACGAGAAGGTAGTGCTGCAAGTGATGCAATAGATACAATGATAAAATTAATGAGCTCTACCAAAGAAGAAACTCAGGCTAAGTCAGCATCAGCTCTAGCAGGCATCTTTGAAATGAGGAAAGATGTGCGTGAAAGCAGCATTGCTGTTAAAACTCTTTTGTCGGCTGTGAAGTTGCTTAATGTTGAATCCGAAAGTATTCTAATAGAGTCATCAAGGTGCCTTGCGGCAATATTTCTTTCCATAAAAGAGAATAGAGACGTAGCTGCTGTTGCTAGAGATGCATTACATCCCTTGGTTACCCTCGCAAATTCTTCTGATTTGGATGTTGCAGAGGTGGCAACATGTGCGGTTGCTAATCTTATTTTAGACAGTGAGATTTCAGAGAAAGCTGTTGCTGAAGAAGTTATCATGCCAGCAACCAGGGTATTACGTGAAGGCACAATTTCTGGAAAAACCCATGCAGCCGCAGCAATTGCTCGACTCATACACTCTCATCAAGTTGATTCTTCTATAATTGAATGTGTGAATCATGCTGGGACTGTGCTTGCTTTGGTTTCCTTCCTGGATTCTGCTATTAATGCATCAGTTTCCACTTCTGAGGCTATAGAAGCACTTGCTGTTCTGTCCAGGTTGGAACAAAAGAGCACGCATATTAAACCGGCATGGGCTGTATTGGCTGAATTCCCTGAAAGCATAAGCCCAATAGTGCTGTCTATTGCTGATTCATTGCCAATGTTTCAGGATAAAGCTATTGAGATATTGTCCCAGTTATGCAGGGATCAGCCTATTGTACTTGGAAACAACATTGTTGCGGCCTCTGGATGCTTGTCTTCATTAGCCAAAAGGGTAATTGGTACCAAAAATGTGATGGTCAAAATTGGAGGAGCTGCACTTCTTATTTGTGCTGCCCAAGCGAACCATCAGAGACTGGTGGAGGAACTCAACCAATCAGGCTTGTGTGTTGATCTTGTTCAATCTCTAGTTAATATACTTTCCTCTGCTCTGCCTCTGTCAAACCAGAGTGAAGAAAACAAGGAATTCATTAGCATTATCATACATAGAAAAGAAGATGCCAATGGTGGTAAATCCAGCACAGGCAATGCGATTGTATCTGATGCCAACTTAGCTATATGGTTACTGTCTATTTTTGCTTGTCATGATGAAACATGTAAAATTGCAATGATGGAGGCTGGAGCAATTGACATTCTCACTGAAAAAATCTCAGACTGTTACCCACAATATACCCAGATTGATTATAAAGAAGATAGTAGCATGTGGATTTGTGCATTGTTGTTGGCTGTATTATTTCAAGATAGAGATATCATCAGAGCACATGCTACCATGAAATCTGTACCAGCTGTTGCCAGTTTATTGAAGTCGGAGGAATTATCTAACAGATATTTTGCAGCACAAGCAATAGCTAGCCTAGTCTGTAATGGAAGTCGAGGGACACTACTCTCTGTTGCGAACTCAGGGGCTGCAAGTGGGTTAATCTCCTTACTTGGCTGTGCTGACACTGATATACAAGACCTTCTTGATTTGTCAGAGGAGTTCTCCCTGGTTCATTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTCAGAGTTGATGACATTAGGGTCGGTGCCACTTCGCGGAAGGCAATACCCGCCCTTGTTGATCTGCTCAAACCAATTCCAGATCGCCCGGGAGCACCTTTTTTAGCTCTTGGACTTCTAACTCAGCTCGCCAGAGATTGCCCGTCTAATAAGATTGTGATGGTGGAATCTGGGGCCTTGGAGGCGCTTACAAAGTATCTTTCACTGGGTCCCCAGGATGCCACCGAAGAAGCTGCTACTGATCTTTTGGGAATTCTGTTTGACAGTGCTGAGATACGCAGACACGAGGCAGCATTTGGTGCTGTTACCCAACTTGTAGCTGTGTTACGTTTAGGTGGAAGGGGTGCAAGGTACAGTGCTTCCAGAGCCTTGGAGAATTTGTTCTCTGCTGATCAGATTAGGAATGCAGAGACTGCTCGACAAGCTGTTCAACCCTTGGTGGAGATTCTTAACACTGGTTTAGAGAAGGAGCAGCATGCTGCAATTGCTACATTGGTTAGGCTCCTAAGCGAAAATCCATCGAGAGCGCTAGCTGTTGCTGATGTTGAAATGAATGCAGTGGATGTGCTTTGCAGGATCCTTTCATCAAATTGTTCGTTGGACCTCAAAGGGGATGCTGCTGAGCTATGTTGTGTTCTGTTTGGAAATACTCGGATCAGGTCCTCAGTGGCTGCTGCACGCTGTGTTGAACCTCTGGTTTCTCTCCTCGTAAGCGAGTTTAGCCCTGCCCAGCATTCAGTTGTCCGTGCACTGGATAGGCTTGTTGATGATGAGCAATTGGCTGAACTGGTTGCTGCTCACGGTGCAATTATTCCTCTTGTTGGTCTTCTCTATGGTAGGAATTATTTGCTCCATGAGGCCATTTCTAGAGCTCTGGTTAAGCTAGGGAAAGACAGACCCGCTTGTAAAATGGAAATGGTCAAAGGTGGAGTTATTGAAAGCGTACTTGACATTCTTCATGAAGCACCTGATTATCTGTGTGCAGCATTTGCTGAATTGCTGCGTATACTGACCAACAATGCTAGCATAGCTAAAGGGCAGTCGGCTTCTAAAGTGGTTGAGCCCCTATTTTTGTTGCTGACGAGACAAGAATTTGGGCCTGATGGACAGCACAGTGTATTGCAGGTTTTGGTGAATATCTTGGAACATCCACAATGTCGTGCTGACTATACACTGACATCCCACCAAGCTATTGAACCACTTATCCCTCTGCTTGATTCTCCAATACCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTCTCACATCTTCTTTTGGAAGAACAGCTTCAGAAGGATCCAGCTACACAGCAGGTAATTGGTCCTCTTATTCGAGTTCTTGGTTCTGGTATCCACATATTGCAGCAGAGGGCTGTGAAGGCCCTTGTTAGTATTGCACTGATATGGCCAAATGAAATTGCAAGAGAAGGCGGTGTTGTTGAACTTTCGAAAGTGATACTGCATGCTGATCCTTCACTTCCCCATGCTTTATGGGAGTCTGCTGCTTCTGTTTTGTCAAGCATTCTGCAATTCAGTTCTGAATTCTACCTGGAAGTGCCTATTGCCGTGTTGGTAAGGTTGCTCCGTGCTGGCTCAGAGAGCACTGTTATTGGCGCATTAAATGCTCTTCTAGTGTTAGAAAGCGATGATGGAACTAGTGCAGAAGCAATGGCTGAAAGTGGTGCCATAGAGGCTCTCTTAGAGCTTCTAAGATCTCATCAGTGCGAGGAAACTGCTGCTAGACTAGTGGAAGTATTGTTAAACAACGTCAAGATTAGAGAAACAAAAGCTACCAGATCAGCCATCGTACCGTTATCACAGTACCTCTTGGATCCACAAACCCAAGGACAGCAGGCAAGGTTACTGGCAACTCTGGCTCTTGGTGATCTATTTCAGAATGAGAGTCTTGCTCGAACAAGTGATGCAGTTTCAGCATGCCGTGCTTTGGTGAATGTGCTTGAAGATCAACCAACAGAAGAAATGAAAGTTGTAGCTATATGTGCTCTTCAGAACCTCGTGATGCATAGTCGATCAAATAAAAGAGCAGTTGCTGAGGCTGGTGGTGTACAGGTTGTATTGGATCTGATAGGTTCAAGTGATCCAGAAACATCAGTTCAGGCAGCAATGTTCATTAAACTTCTCTTCTCTAATCATACAATTCAAGAGTATGCTTCAAGTGAAACGGTCAGAGCAATAACTGCTGCTATCGAAAAGGATTTATGGGCTACAGGAAATGTTAATGATGAGTATCTGAGAGCCTTGAATGCTCTTTTTAGCAACTTCCCACGGCTGAGAGCAACTGAGCCAGCGACACTTAGCATTCCCCATCTGGTTACATCATTAAAGACAGGCTCTGAGGCTACTCAGGAAGCTGCATTGGATTCACTTTTTCTCCTCAGGCAAGCTTGGTCAGCATGTCCTGCAGAAGTCTCGAGAGCTCAGTCAATAGCAGCTGCAGATGCTATTCCTTTGCTACAGTACTTAATCCAGTCTGGTCCTCCTCGGTTTCAAGAGAAGGCTGAGTTCTTATTGCAGTGTTTGCCTGGCACATTAGTTGTGATCATAAAACGTGGTAACAACATGAAGCAGTCAGTTGGAAACCCAAGTGTTTACTGTAAGCTTACACTTGGCAACACCCCTCCAAGGCAAACGGCGGTGGTCTCAACTGGCCCTAATCCGGAGTGGGATGAGAGTTTTTCATGGTCCTTTGAGAGCCCTCCAAAAGGCCAGAAGCTTCACATTTCTTGCAAAAATAAGAGCAAAGTGGGAAAGAGTTCATTCGGGAAAGTGACAATCCAAATTGATCGTGTGGTAATGCTTGGATCTGTTGCCGGAGAATACACTCTCCTGCCTCAAAGTAAAAGTGGTCCCCCAAGGAATTTAGAGATAGAATTCCAGTGGTCTAACAAATGA 6453 0.4427 MTTTLAWRIGSNNGSSLAVSEMERNGEGNIPDSEPLTPHSVSKMGLRERSSSMEDPDGTLASVAQCIEQLRQSSSSAQEKEYSLRQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSVSVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIYAVSQGGSKDHVGSKIFSTEGVVPVLWEQLRKGLKTGNVVDGLLTGALKNLSGNTEGFWSTTIKAGGVDILMKLLTSGHPSTLANVCFLLASMMMEDASVCSKVLTSEATKQLLKLLGPGNDAAIRAEAAGALKALSSQCKEARREIASSNGIPALINATIAPSKEFMQGEHAQALQENAMCALANISGGLSYVISSLGQSLESCTSATQIADTLGALASALMIYDSNAEATRTSDPLVVEQTLLKQFKPQSPFLVKERTIEALASLYGNPVLSVKLANSDAKHLLVGLITMAANEVQDDLIRALLTLCNNEGSLWHALQGREGVQLLISLLGLSSEQQQECAVTLLCLLSYENDESKWAITAAGGIPPLVQILETGSTKAKEDSAKILTNLCNHSEDIRACVESANAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTTTISQLTALLTSDLPESKVYVLDALRSMLSVAPLSDIQREGSAASDAIDTMIKLMSSTKEETQAKSASALAGIFEMRKDVRESSIAVKTLLSAVKLLNVESESILIESSRCLAAIFLSIKENRDVAAVARDALHPLVTLANSSDLDVAEVATCAVANLILDSEISEKAVAEEVIMPATRVLREGTISGKTHAAAAIARLIHSHQVDSSIIECVNHAGTVLALVSFLDSAINASVSTSEAIEALAVLSRLEQKSTHIKPAWAVLAEFPESISPIVLSIADSLPMFQDKAIEILSQLCRDQPIVLGNNIVAASGCLSSLAKRVIGTKNVMVKIGGAALLICAAQANHQRLVEELNQSGLCVDLVQSLVNILSSALPLSNQSEENKEFISIIIHRKEDANGGKSSTGNAIVSDANLAIWLLSIFACHDETCKIAMMEAGAIDILTEKISDCYPQYTQIDYKEDSSMWICALLLAVLFQDRDIIRAHATMKSVPAVASLLKSEELSNRYFAAQAIASLVCNGSRGTLLSVANSGAASGLISLLGCADTDIQDLLDLSEEFSLVHYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLARDCPSNKIVMVESGALEALTKYLSLGPQDATEEAATDLLGILFDSAEIRRHEAAFGAVTQLVAVLRLGGRGARYSASRALENLFSADQIRNAETARQAVQPLVEILNTGLEKEQHAAIATLVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSLDLKGDAAELCCVLFGNTRIRSSVAAARCVEPLVSLLVSEFSPAQHSVVRALDRLVDDEQLAELVAAHGAIIPLVGLLYGRNYLLHEAISRALVKLGKDRPACKMEMVKGGVIESVLDILHEAPDYLCAAFAELLRILTNNASIAKGQSASKVVEPLFLLLTRQEFGPDGQHSVLQVLVNILEHPQCRADYTLTSHQAIEPLIPLLDSPIPAVQQLAAELLSHLLLEEQLQKDPATQQVIGPLIRVLGSGIHILQQRAVKALVSIALIWPNEIAREGGVVELSKVILHADPSLPHALWESAASVLSSILQFSSEFYLEVPIAVLVRLLRAGSESTVIGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLVEVLLNNVKIRETKATRSAIVPLSQYLLDPQTQGQQARLLATLALGDLFQNESLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMHSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGNVNDEYLRALNALFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDSLFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTAVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKVGKSSFGKVTIQIDRVVMLGSVAGEYTLLPQSKSGPPRNLEIEFQWSNK 2150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4283g00051 2150 SMART C2_3c 2030 2126 IPR000008 -
Pral4283g00051 2150 SUPERFAMILY ARM repeat 1579 2027 IPR016024 -
Pral4283g00051 2150 ProSiteProfiles C2 domain profile. 2010 2127 IPR000008 -
Pral4283g00051 2150 MobiDBLite consensus disorder prediction 21 57 - -
Pral4283g00051 2150 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1195 1239 IPR000225 GO:0005515
Pral4283g00051 2150 Gene3D - 48 412 IPR011989 -
Pral4283g00051 2150 Pfam Armadillo/beta-catenin-like repeat 104 134 IPR000225 GO:0005515
Pral4283g00051 2150 Pfam Armadillo/beta-catenin-like repeat 525 564 IPR000225 GO:0005515
Pral4283g00051 2150 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 31 2150 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Pral4283g00051 2150 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1379 1613 - -
Pral4283g00051 2150 SUPERFAMILY ARM repeat 64 773 IPR016024 -
Pral4283g00051 2150 CDD C2 2031 2121 - -
Pral4283g00051 2150 Gene3D - 1650 2027 IPR011989 -
Pral4283g00051 2150 Gene3D - 1176 1379 IPR011989 -
Pral4283g00051 2150 Gene3D - 819 1171 IPR011989 -
Pral4283g00051 2150 Pfam C2 domain 2029 2119 IPR000008 -
Pral4283g00051 2150 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2029 2134 IPR035892 -
Pral4283g00051 2150 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2029 2150 - -
Pral4283g00051 2150 SMART arm_5 268 309 IPR000225 GO:0005515
Pral4283g00051 2150 SMART arm_5 1228 1269 IPR000225 GO:0005515
Pral4283g00051 2150 SMART arm_5 1438 1478 IPR000225 GO:0005515
Pral4283g00051 2150 SMART arm_5 1397 1437 IPR000225 GO:0005515
Pral4283g00051 2150 SMART arm_5 1310 1351 IPR000225 GO:0005515
Pral4283g00051 2150 SMART arm_5 136 176 IPR000225 GO:0005515
Pral4283g00051 2150 SMART arm_5 1565 1606 IPR000225 GO:0005515
Pral4283g00051 2150 SMART arm_5 733 771 IPR000225 GO:0005515
Pral4283g00051 2150 SMART arm_5 817 859 IPR000225 GO:0005515
Pral4283g00051 2150 SMART arm_5 482 523 IPR000225 GO:0005515
Pral4283g00051 2150 SMART arm_5 1729 1768 IPR000225 GO:0005515
Pral4283g00051 2150 SMART arm_5 311 360 IPR000225 GO:0005515
Pral4283g00051 2150 SMART arm_5 1183 1226 IPR000225 GO:0005515
Pral4283g00051 2150 SMART arm_5 525 565 IPR000225 GO:0005515
Pral4283g00051 2150 SMART arm_5 1856 1896 IPR000225 GO:0005515
Pral4283g00051 2150 SMART arm_5 567 607 IPR000225 GO:0005515
Pral4283g00051 2150 SMART arm_5 94 135 IPR000225 GO:0005515
Pral4283g00051 2150 Gene3D - 1380 1647 IPR011989 -
Pral4283g00051 2150 SUPERFAMILY ARM repeat 1023 1378 IPR016024 -
Pral4283g00051 2150 Gene3D - 613 818 IPR011989 -
Pral4283g00051 2150 Coils Coil 297 317 - -
Pral4283g00051 2150 Gene3D - 422 612 IPR011989 -
Pral4283g00051 2150 SUPERFAMILY ARM repeat 1320 1653 IPR016024 -
Pral4283g00051 2150 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
Pral4283g00051 2150 Gene3D C2 domain 2028 2150 IPR035892 -
Pral4283g00051 2150 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1824 1867 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4283g00051 Pral-Chr4283 458431 469037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4283g00051 498 620 U-box Gene Family AT2G23140 41.935 1.27e-12 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4283g00051 - - gmx:100816765 3560