Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4283g00047 ATGGCGGATCGCTCAGACGATTCGCCTCTAATCCCTCCAAAGCCTATCATTGACCCTAGCGAGATCGACCTGGAAGCCGGTCCCTGCGAACAAATCCAATGCCGGATTTGTCTCGAGACTGATGGTAGGGACTTCATAGCGCCTTGCAAGTGCAAAGGGACATCAAAATATGTACATCGAGAATGTTTGGATCATTGGCGAGCTGTTAGGGAAGGATTTGCGTTTGCTCATTGCACGACCTGCAAGGCTCCTTATCATTTGCGTGTCCATGTTGCTGCTGATAGGAAATGGCGAACCTTGAAATTTCGGTTCTTTGTCACAAGAGACATTTTGTTTATATTTCTGTCTGTCCAGCTTGTCATTGCTTCACTGGCTTATTTGGTTTTTCTAATGGATGGTTACCAGCAATACTGGCTTCGTCACATTTGGGGTTTTGATAGTGAGCTTAGCTTTTACTACATATGCGGGGCTTTACTATTTTTTGCTTTGCTTGGCCTGTCTGGCTGCTTCATCACTTGTTATGATCGAAGAGTTCGCAATGATTTAGCTCAACCTTGTCGGGAATTATGTCTTTGTTGCTGTCAACCTGGGGTCTGTGCAGACTGTCATTTGCCAGGAACTCTCTGCATGTGGACTGACTGCACCACATGCTTTGAGAGTTGTGGAACCATGGCTACTGAATGTGGCGGATGCCTCGGAGGTGCCGGGGAAGCAGGGCTACCTCTACTGTTTATAATGGCTCTGATTGTTTTGGGACTTTTTACTGTAATTGGAATATTTTACAGTGTATTGGTGGCTACCATGGTAGGACAGCGAATTTGGCAGCGACATTACCACATACTTGCAAAAAGAATGCTAACAAAGGAGTACGTTGTTGAGGACGTTGATGGGGAAATGACAGGATCTGATTGGTGCCCTCCGCCTCTGCCCCCCGAGCACGTTCAGCAGCTAAAAACTCTCGGCCTCCTATGA 972 0.4681 MADRSDDSPLIPPKPIIDPSEIDLEAGPCEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILFIFLSVQLVIASLAYLVFLMDGYQQYWLRHIWGFDSELSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWCPPPLPPEHVQQLKTLGLL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4283g00047 323 SMART ringv_2 33 82 IPR011016 GO:0008270
Pral4283g00047 323 SUPERFAMILY RING/U-box 29 86 - -
Pral4283g00047 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Pral4283g00047 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Pral4283g00047 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Pral4283g00047 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 20 322 - -
Pral4283g00047 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 96 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4283g00047 Pral-Chr4283 377135 381273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4283g00047 1 323 C3H Transcription Factor Family AT2G22120 84.877 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4283g00047 - - gmx:100791777 641.343