Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4283g00018 ATGGACTTGACCGCGAAGCTTCATCACCTTGAGCTCAGTTCAAGCTTCCTCGCCGGCACAGTCATTTTGGACACACGGAAAGCCGCTGTACGACCTTACATTCGGCCAGCTTCAAATCGTGTGGTTTCTCAAAGCCTTAGAGGTAATAGTAATTTAGTTAAATCCACTCAATTTATTGTTCCTAGAAGAGCGAATTTTAGTATCGCTGCTAGTTCATCTGCGGTCGCCGTCGAGACATCGGCGGCAGAATCCACTGCCAAAGAGGACATTGAGTCTTTGTTTTCGGAGTCTTCGGTTGATGAATTTGAGAATAAACGTGTTAAGCAGTCCAATACCGGTGCGTCGAGCATTTCATCTGGTGTCAAGTTAGAGAATGTGAGCAAAAGTTACAAGGGCGTCACTGTCTTGAAAGATGTTAGTTGGGAAGTGAAAAAAGGTGAAAAAGTGGGATTGGTTGGTGTAAATGGTGCAGGAAAGACGACACAAATGAGAATTATTGCTGGTGAGGAGGAGCCAGATTCGGGGAATGTAATAAAAGCCAAACCAAATATGAAAATTGCTTTTCTGAGCCAGGAATTTGAGGTATCTCTGACTAGGACCGTGAGGGAGGAATTTCTGAGTGCATTTAAGGAGGAGATGGAGGTAGCAGGGAAGTTGGAGAAGGTGCAGAAGGCACTCGAGGGTTCTGTGAACGATTTAGAATTAATGGGGAGGCTTTTAGACGAGTTTGATTTGCTTCAGAAGAAGGCCCAGGCAGTGAACTTGGATGTAGTAGACGCGAAGGTAAGCAAATTGATGCCGGAACTTGGTTTTTCTTCGGATGATTCAGACAGGCTGGTGGCGTCATTTAGTAGTGGATGGCAGATGAGGATGTCCCTGGGAAAGATTTTACTTCAGGAGCCTGATTTATTACTGTTGGATGAACCAACAAATCACCTTGACCTTGATACCATTGAGTGGCTTGAAGGGTATCTTAACAAGCAAGATGTGCCAATGGTTATCATTTCCCACGACAGAGCTTTTCTTGATCAACTGTGTACAAAAATTGTGGAAACTGACATGGGTGTATCCAGAACATATGAGGGAAATTATTCCCAGTATGTAATTTCAAAGGCAGCATGGATTGAAGCACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAGCAGACAAAGGACTTGATAAACAGGCTAGGTGCTGGAGTAAATTCTGGCCGTGCTTCATCGGCTGAGAAGAAGCTGGAGAGACTTCAAGAAGAGGAACTAGTAGAGAAGCCATTTCAACGGAAACAAATGAAAATCAGGTTCCCTGAGCGTGGAAGAAGTGGAAGATCCGTTGTATCAATTAAGAATTTGGAATTTGGCTTTGAGGATGAAGTGCTCTTCAAGAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTGCTGAAGCTCATAATGGGTTTAGAGAAGCCAAATGGGGGTGAAGTTGTGCTTGGGGAGCATAATGTATTGCCAAACTATTTTGAGCAAAATCAGGCTGAGGCACTTGATCTGGAGAAGACAGTGCTTGAGACAATAGAAGAAGCTGCTGAGGACTGGAGGATAGATGATATCAAAGGACTTCTTGGGCGTTGTAATTTCAAATCTGATATGCTTGACCGGAAAGTTTCCCTATTGAGTGGTGGTGAGAAGGCACGACTGGCTTTTTGCAAATTTATGGTAACACCATCAACTCTGCTTGTGTTGGATGAACCAACCAATCACTTGGACATACCTTCTAAGGAAATGCTTGAGGAGGCGATAAATGAGTACAAAGGCACTGTTATTACAGTGTCTCATGATCGATACTTCATAAAGCAGATAGTTAATAGAGTCATAGAAGTTAAAGATGGAACTATACAGGATTATGCTGGCGACTATAATTACTATTTAGAAAAGAATCTTGATGCTAGAGCTAGAGAGCTTGAACGTGAGGCGGAGCTTGAAGAGAAAGCTCCAAAGGTGAAAGCCAAATCCAAGATGTCAAAGGCTGAGAAAGAAGCACGGAAGAAACAGAAGATGCAGGCTTTTCAGGCAGCAAAGCAGAAGTCTAAAGGGTCAAAAAATGCCAAGAGATGGAATTGA 2148 0.4311 MDLTAKLHHLELSSSFLAGTVILDTRKAAVRPYIRPASNRVVSQSLRGNSNLVKSTQFIVPRRANFSIAASSSAVAVETSAAESTAKEDIESLFSESSVDEFENKRVKQSNTGASSISSGVKLENVSKSYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGEEEPDSGNVIKAKPNMKIAFLSQEFEVSLTRTVREEFLSAFKEEMEVAGKLEKVQKALEGSVNDLELMGRLLDEFDLLQKKAQAVNLDVVDAKVSKLMPELGFSSDDSDRLVASFSSGWQMRMSLGKILLQEPDLLLLDEPTNHLDLDTIEWLEGYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTYEGNYSQYVISKAAWIEAQYAAWEKQQKEIEQTKDLINRLGAGVNSGRASSAEKKLERLQEEELVEKPFQRKQMKIRFPERGRSGRSVVSIKNLEFGFEDEVLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPNGGEVVLGEHNVLPNYFEQNQAEALDLEKTVLETIEEAAEDWRIDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVTPSTLLVLDEPTNHLDIPSKEMLEEAINEYKGTVITVSHDRYFIKQIVNRVIEVKDGTIQDYAGDYNYYLEKNLDARARELEREAELEEKAPKVKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGSKNAKRWN 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4283g00018 715 Pfam ABC transporter 136 311 IPR003439 GO:0005524
Pral4283g00018 715 Coils Coil 675 704 - -
Pral4283g00018 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 655 IPR027417 -
Pral4283g00018 715 CDD ABCF_EF-3 121 351 - -
Pral4283g00018 715 Gene3D - 410 680 IPR027417 -
Pral4283g00018 715 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 448 663 IPR003439 GO:0005524
Pral4283g00018 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 374 IPR027417 -
Pral4283g00018 715 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 121 379 IPR003439 GO:0005524
Pral4283g00018 715 Coils Coil 653 673 - -
Pral4283g00018 715 ProSitePatterns ABC transporters family signature. 283 297 IPR017871 GO:0005524|GO:0016887
Pral4283g00018 715 Pfam ABC transporter 464 595 IPR003439 GO:0005524
Pral4283g00018 715 SMART AAA_5 145 355 IPR003593 GO:0016887
Pral4283g00018 715 SMART AAA_5 472 640 IPR003593 GO:0016887
Pral4283g00018 715 CDD ABCF_EF-3 448 640 - -
Pral4283g00018 715 MobiDBLite consensus disorder prediction 667 715 - -
Pral4283g00018 715 Gene3D - 117 401 IPR027417 -
Pral4283g00018 715 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 120 707 - -
Pral4283g00018 715 MobiDBLite consensus disorder prediction 667 695 - -
Pral4283g00018 715 FunFam ABC transporter ATP-binding protein 408 676 - -
Pral4283g00018 715 ProSitePatterns ABC transporters family signature. 567 581 IPR017871 GO:0005524|GO:0016887
Pral4283g00018 715 FunFam Putative ABC transporter ATP-binding component 122 406 - -
Pral4283g00018 715 Pfam ABC transporter 350 437 IPR032781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4283g00018 Pral-Chr4283 137768 143443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4283g00018 445 665 Calmodulin-binding Proteins AT2G36910 25.911 2.36e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4283g00018 - - qsa:O6P43_030405 1101.66