Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4281g00013 ATGAAACCTAAGTCCCCCACTAGCTGTTACTTCTCTTTCTTCATATTCTTCTCCCTCGCCGCTTTCTCTCTCCAATCTCCTACTTCATCCTCTGCTTTTTCAGCTTTCAGAGATTCTGCTCAACAATTGATCAGCTTCAAGGCTTCTCTCCCGGACCAATCCGTACTCAAAGACTGGCTTCCTAATCAAAACCCATGTTCTTTCACTGGGATTTCCTGCAAGCAACCCGGGGCTTATTCCATAGACCTCAGCTCCGTCTCTCTGGGGACAAACTTCAGTGTTGTCTCTGCCTATCTTCTCTCACTCGACCGCCTGGAAGCTCTCAACCTCAAGCGCACCAATCTTACTGGTAGCATTTCTGTGCTTCCACATGCGTTCAAGTGTGGTGCCTCATTGAGCAGTATAGATCTATCTCAGAACGGATTGTCAGGTTCTGTTTCGGACATATCCTATCTGAGCTCCTGTTCAAGTTTGAAATCTCTCAACCTTTCGAATAATGCTTTTGAGTTTTCTGGGAAAGATTCCACGGGCTTGAGGCTCAATCTCCAAGTGCTGGATATCTCTTTTAATAATAATATTTCCGGTCCAAATGTTCTCCCTTGGATCTTATCTCCAGGTTGCGACGATATGCAAGTGTTGGCTCTGAGAGGGAACAAAATCGCCGGAGAAATCAATTTCTCAAAGTGCCAGAAATTGCAGCATTTGGACCTTTCTGCGAATAATTTCTCTGTTGCTATTCCTTCGTTCGGTGAATGTTCGGCGTTGGAGTACCTTGATATCTCTGCTAACAAGTATTTCGGCGACATTGGCCTCGCTCTCTCTTCCTGCAAGAAGCTCAGCCACCTCAACGTTTCAAGCAACGAGTTCTCTGGTCCGGTTCCGTCACTTCCTGTGGACTCTTTGCAGTTCCTTTATCTCGCAGGCAACAAGTTCCATGGTCAGATTCCGGAACAACTGACGGATTTGTGCACCACTCTCGTGGAGCTCGATCTTTCCTCGAACTCCCTTTCTGGTACGATTCCGCGCGGTTTTAGCGCCTGTTCTTCGCTGGAATTGTTTGATATATGTAAAAACAAGTTTTCCGGTGAGTTACCAATTGAAATTTTTGTGGAGATGAGCAGCTTGAAGAAGCTAGTTCTTTCATCCAATGATTTAGTCGGTAATTTGCCGGATAATCTGTCGAAGCTCACCAGCTTGGAAACTTTGGATTTGAGTTCCAATAACTTATCCGGGTCAATACCTGGAGGGCTATGTCAAGATCCTAGGAACAATTTGAAAGAACTATACCTGCAGAATAATGTGCTCACGGGTTTGATTCCACCCACACTCAGCAACTGTTCTCAGCTTCTGTCATTGGATTTAAGTGTCAACTACCTGAAGGGGACTATCCCTTCCAGCCTGGGGTCTCTTTCGAAGCTTCGTGATTTGATCATGTGGCTAAATCAGCTTCAAGGCGAAATACCACAAGAGCTCATGTACATTAAGACCCTTGAGAATTTGCTTTTGGACTTCAATGAGCTCACAGGGAACATTCCTTCTGGTTTAAGAAACTGCACTGCCTTGAATTGGATCTCCCTGTCTAATAACAGATTGAGCGGGGAGATTCCTGCTTGGATTGGCCAGCTTTCCAATCTTGCAATCCTGAAACTGAGCAATAACTCATTCTCTGGGAGGATTCCACCTGAACTTGGTGATTGTCGCAGTTTGATATGGTTAGATCTAAATACAAATTTCCTAAATGGGTCAATTCCTCCTGAGTTGTTCAAGCAATCTGGCAAAATCACAGTGGATTTCATACGTGGGAAAACTTACGTGTATATCAAGAATGATGGCAGCGAGGCATGCCACGGAGCAGGGAATTTACTAGAGTTTGCTGGGATCAGTACGGAGCAGTTGAACAGAATTTCTACCAGGAATCCTTGTAACTTCACTAGAGTTTATAGGGGCAATCTCCAACCTACGTTTAGTAATAATGGGTCGATGATTTTTTTGGATCTTTCATACAATATGCTGTCAGGTAGTATACCGAAGGAGATTGGGAGCTTGTATTATGTAGACATTTTGAATTTGGGTCACAACAACCTATCTGGAAATATTCCCGAAGAGCTTGGGAAGGCAATAAAACTGGACATACTTGATCTCTCATGGAATAGGCTTGAAGGACAAATTCCACCGTCTTTGACCGGCCCTTCCATGCTCTCTGAAATTGACCTGTCAAACAACTTTCTATCGGGAGTGATTCCTGACTCTGCTCAATTTGGAACCTTCTCTCCCAGCAGTTTCGCGAATAATTCTGGTCTCTGCGGATTCCCTCTTGCTCCATGTGGGACACGCCCAGGATCAAGTTCAGATGCTCAACATCAGAAATCTCGCAGGAGGCAAGCATCTCTTGCAGGTAGTTTGGCTATGGGATTGCTATTCTCCCTCTTCTGCATCTTTGGTGTACTTATAATTGCCCTAGAGACCAGAAAGAGGAGGAAGAAGAAGGAAGCTGCTCTAGATGCCTACATGGACAACAATTCTCATTCAGGCACAGGCAACAATACAAACTGGAAGCTTACGCCCCGTGAAGCACTTAGCATAAACCTTTCAGCATTTGAGAAGCCCATCCGAAAACTTACCTTTGCAGATCTCCTTGAAGCTACTAACGGCTTTCACAATGACAGTCTTATTGGTTCTGGTGGTTTTGGTGATGTCTACAAGGCTCAACTGAAGGATGGAATTGTTGTGGCTATCAAGAAACTGATACCTATTAGTGGTCAAGGTGACAGGGAATTCACAGCTGAAATGGAAACCATTGGGAAAATCAAGCATCGCAACCTAGTTCCCCTTCTGGGTTACTGCAAGGTTGGGGAAGAAAGACTCCTGGTTTATGAATTCATGAAATATGGAAGTCTAGAAGATGTTTTGCACGAGCGGAAGAAAGCTGGGGTCAAGCTGAACTGGGCTGTAAGAAGGAAAATTGCGATTGGGGCTGCCAGGGGATTGGCTTTTCTTCATCACAATTGCATCCCACACATCATTCATCGAGACATGAAGTCCAGTAATGTGTTGCTTGATGAGAATTTGGAATCCAGAGTCTCTGATTTTGGAATGGCTAGGCTTATGAGTGCCGTGGATACCCATTTAAGTGTCAGCACGCTAGCAGGCACCCCTGGCTATGTTCCTCCTGAATATTATCAGAGTTTTAGATGCTCTACTAAAGGTGATGTGTATAGTTATGGAGTAGTTTTGCTGGAGCTGCTAACTGGGAGACGCCCGACAGATTCGGCAGATTTTGGCGATAATAATCTCGTGGGATGGGTTAAACAACATGTCAAACTGAAAGTCAATGAAGTTTTTGATCCAGAGCTCTTGAAAGAGGATCCTAGTCTCGAGACTGAGCTTCAACAACACTTGAAAGTTGCTTGTGCTTGTTTGGATGATCGACCATGGCGGCGTCCCACAATGATTCAAGTCATGGCAATGTTCAAGGGAATCCAAGCTGGGTCTGGCATTGATTCTCAATCCACCATAGACACTGAAGATGGAGGTTTTGGTTCAGTTGAAATGGTAGATATGAGCATAAAAGAAGCCCCTGAAGTAAACAAGCCATAA 3597 0.4462 MKPKSPTSCYFSFFIFFSLAAFSLQSPTSSSAFSAFRDSAQQLISFKASLPDQSVLKDWLPNQNPCSFTGISCKQPGAYSIDLSSVSLGTNFSVVSAYLLSLDRLEALNLKRTNLTGSISVLPHAFKCGASLSSIDLSQNGLSGSVSDISYLSSCSSLKSLNLSNNAFEFSGKDSTGLRLNLQVLDISFNNNISGPNVLPWILSPGCDDMQVLALRGNKIAGEINFSKCQKLQHLDLSANNFSVAIPSFGECSALEYLDISANKYFGDIGLALSSCKKLSHLNVSSNEFSGPVPSLPVDSLQFLYLAGNKFHGQIPEQLTDLCTTLVELDLSSNSLSGTIPRGFSACSSLELFDICKNKFSGELPIEIFVEMSSLKKLVLSSNDLVGNLPDNLSKLTSLETLDLSSNNLSGSIPGGLCQDPRNNLKELYLQNNVLTGLIPPTLSNCSQLLSLDLSVNYLKGTIPSSLGSLSKLRDLIMWLNQLQGEIPQELMYIKTLENLLLDFNELTGNIPSGLRNCTALNWISLSNNRLSGEIPAWIGQLSNLAILKLSNNSFSGRIPPELGDCRSLIWLDLNTNFLNGSIPPELFKQSGKITVDFIRGKTYVYIKNDGSEACHGAGNLLEFAGISTEQLNRISTRNPCNFTRVYRGNLQPTFSNNGSMIFLDLSYNMLSGSIPKEIGSLYYVDILNLGHNNLSGNIPEELGKAIKLDILDLSWNRLEGQIPPSLTGPSMLSEIDLSNNFLSGVIPDSAQFGTFSPSSFANNSGLCGFPLAPCGTRPGSSSDAQHQKSRRRQASLAGSLAMGLLFSLFCIFGVLIIALETRKRRKKKEAALDAYMDNNSHSGTGNNTNWKLTPREALSINLSAFEKPIRKLTFADLLEATNGFHNDSLIGSGGFGDVYKAQLKDGIVVAIKKLIPISGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEFMKYGSLEDVLHERKKAGVKLNWAVRRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLESRVSDFGMARLMSAVDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGRRPTDSADFGDNNLVGWVKQHVKLKVNEVFDPELLKEDPSLETELQQHLKVACACLDDRPWRRPTMIQVMAMFKGIQAGSGIDSQSTIDTEDGGFGSVEMVDMSIKEAPEVNKP 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4281g00013 1198 SMART serkin_6 885 1157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4281g00013 1198 PRINTS Leucine-rich repeat signature 396 409 - -
Pral4281g00013 1198 PRINTS Leucine-rich repeat signature 326 339 - -
Pral4281g00013 1198 Pfam Leucine Rich Repeat 326 347 IPR001611 GO:0005515
Pral4281g00013 1198 Pfam Leucine Rich Repeat 424 446 IPR001611 GO:0005515
Pral4281g00013 1198 Gene3D Phosphorylase Kinase; domain 1 846 960 - -
Pral4281g00013 1198 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 225 315 - -
Pral4281g00013 1198 SUPERFAMILY L domain-like 653 776 - -
Pral4281g00013 1198 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1007 1019 IPR008271 GO:0004672|GO:0006468
Pral4281g00013 1198 Gene3D Transferase(Phosphotransferase) domain 1 961 1162 - -
Pral4281g00013 1198 SUPERFAMILY L domain-like 64 365 - -
Pral4281g00013 1198 FunFam serine/threonine-protein kinase BRI1-like 2 847 960 - -
Pral4281g00013 1198 Pfam Protein kinase domain 885 1155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4281g00013 1198 CDD STKc_IRAK 891 1160 - -
Pral4281g00013 1198 Pfam Leucine rich repeat 349 409 IPR001611 GO:0005515
Pral4281g00013 1198 SMART LRR_typ_2 372 395 IPR003591 -
Pral4281g00013 1198 SMART LRR_typ_2 542 566 IPR003591 -
Pral4281g00013 1198 SMART LRR_typ_2 396 420 IPR003591 -
Pral4281g00013 1198 SMART LRR_typ_2 298 322 IPR003591 -
Pral4281g00013 1198 SUPERFAMILY L domain-like 300 585 - -
Pral4281g00013 1198 Gene3D Ribonuclease Inhibitor 43 775 IPR032675 -
Pral4281g00013 1198 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 371 1156 - -
Pral4281g00013 1198 SUPERFAMILY Protein kinase-like (PK-like) 871 1161 IPR011009 -
Pral4281g00013 1198 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 653 775 - -
Pral4281g00013 1198 Pfam Leucine rich repeat N-terminal domain 39 73 IPR013210 -
Pral4281g00013 1198 ProSiteProfiles Protein kinase domain profile. 885 1160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4281g00013 1198 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 420 599 - -
Pral4281g00013 1198 ProSitePatterns Protein kinases ATP-binding region signature. 891 914 IPR017441 GO:0005524
Pral4281g00013 1198 FunFam Inactive leucine-rich repeat receptor-like protein kinase 318 415 - -
Pral4281g00013 1198 Pfam Brassinosteroid receptor island domain 592 656 IPR045381 -
Pral4281g00013 1198 FunFam Serine/threonine-protein kinase BRI1-like 1 599 656 - -
Pral4281g00013 1198 ProSiteProfiles Leucine-rich repeat profile. 398 420 IPR001611 GO:0005515
Pral4281g00013 1198 FunFam Brassinosteroid LRR receptor kinase 961 1162 - -
Pral4281g00013 1198 Gene3D - 597 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4281g00013 Pral-Chr4281 157741 161719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4281g00013 29 1194 Receptor kinase-like Gene Family AT4G39400 68.734 0.0 1549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Pral4281g00013 Pkinase 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4281g00013 K13415 - qsa:O6P43_023302 1764.97