Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4281g00005 ATGTGTTTCTTAAAGGCGGGGAATCCTGTGCAGACCTCCCACAACGTTGTTGATGAACACACAAACGTTAGAATAACAAACCCTACTGTTTCTTCGTCTCTTCCAATCGTCTTCCCCGGTATGGATAGGGACAGAGAGATGTCTGCTATGGTCTCTGCTTTGACCCACGTTGTCACGGGAGATATTCCTGGTGATTCCAGAGAAATTTCTGGCGGTGGCGGTGGCGGTGGCGGTGGAGGTGGAGGCGAAGGTGGCTCTGTTACATTAAACTCGCCGTCGGATTCAACAACGCCGTCTTCGTGTTCTTCGTCTTACGGTGGTAGCTCTGTTTTGAAGAGAAGTAGAGAAGATATCATTAGAGGCTCTTCCACTTCTATTATTCAAACAGTTGCAGGAGAAGGTTCAAGAGGAGAGAGAGTTCAAATGGGAAATGCAGTGTATGAATATAGCTGTGATACAGAGAATGTGAGAGGTTCAGAAGAAGGAAGAAGGAAGTACCGAGGAGTGAGACAGAGGCCATGGGGCAAGTGGGCAGCTGAAATCAGAGATCCTTTTAAAGCCGCCAGAGTTTGGCTGGGCACTTTCGAGACGGCGGAGGCGGCGGCCCGTGCTTACGACGAAGCTGCCCTGCGTTTCAGAGGAAACAAGGCCAAGCTCAATTTCCCAGAAAACGTCAGGCTCCGGCAACCTGCGACCACGACGGCGGCGACCCATTTGAGTGGTTCGGGTTCTGCAAGTACCCTTTTGTCCATTCCGTTGACCACCGAGCCGATTGTTCATGCCGAAGCTCTTCACCACCATTCTCTCCTGAGTTCTCAGCCGGCGTTTTCTGGTGATTTTTATACGCCGTCGCAGTTTTCGGAGTTTCCCATGAACTTTTATGATCCGATGATTATGTCATCTTCAATGCCTCATCATTTTGAGTCGTCGACGTTGCCGTCAGCTTTGTCATCGTCGTCATCGGCTTCGTCTTCTACGTTGGCATCTTCTATTAGCTCCCAGCAAGGAGGTTTGCCGTTTCCGGGTTGGGTCGTGCCGGAAACGGGTCCGGAAAGCGCTTCCGAACAGGACCATCAGCATGGTCAACTTCGGGTCATAGTGCTTCTTCCTCTGTATGATCCAATAATTATTATGATAATCATTTAA 1146 0.4991 MCFLKAGNPVQTSHNVVDEHTNVRITNPTVSSSLPIVFPGMDRDREMSAMVSALTHVVTGDIPGDSREISGGGGGGGGGGGGEGGSVTLNSPSDSTTPSSCSSSYGGSSVLKRSREDIIRGSSTSIIQTVAGEGSRGERVQMGNAVYEYSCDTENVRGSEEGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVRLRQPATTTAATHLSGSGSASTLLSIPLTTEPIVHAEALHHHSLLSSQPAFSGDFYTPSQFSEFPMNFYDPMIMSSSMPHHFESSTLPSALSSSSSASSSTLASSISSQQGGLPFPGWVVPETGPESASEQDHQHGQLRVIVLLPLYDPIIIMIII 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4281g00005 381 CDD AP2 165 224 IPR001471 GO:0003700|GO:0006355
Pral4281g00005 381 FunFam Ethylene-responsive transcription factor 2 164 223 - -
Pral4281g00005 381 PANTHER DNA-BINDING DOMAIN 141 324 IPR044808 GO:0003700|GO:0009873
Pral4281g00005 381 SMART rav1_2 165 228 IPR001471 GO:0003700|GO:0006355
Pral4281g00005 381 ProSiteProfiles AP2/ERF domain profile. 165 222 IPR001471 GO:0003700|GO:0006355
Pral4281g00005 381 MobiDBLite consensus disorder prediction 86 108 - -
Pral4281g00005 381 Pfam AP2 domain 165 214 IPR001471 GO:0003700|GO:0006355
Pral4281g00005 381 SUPERFAMILY DNA-binding domain 165 223 IPR016177 GO:0003677
Pral4281g00005 381 Gene3D AP2/ERF domain 164 224 IPR036955 GO:0003700|GO:0006355
Pral4281g00005 381 PRINTS Ethylene responsive element binding protein signature 188 204 IPR001471 GO:0003700|GO:0006355
Pral4281g00005 381 PRINTS Ethylene responsive element binding protein signature 166 177 IPR001471 GO:0003700|GO:0006355
Pral4281g00005 381 MobiDBLite consensus disorder prediction 59 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4281g00005 Pral-Chr4281 74288 76141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4281g00005 173 271 AP2-EREBP Transcription Factor Family AT5G64750 62.385 3.00e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4281g00005 AP2 2.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4281g00005 - - pcin:129309833 429.098