Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4276g00003 ATGGTTTCTCTGGAGGATTCTCACTCCAACTCCAATCGTTTCCCTTTAACCCGAAGCTATTACTCTACTACCACTTCCGCCAACAATTCTTCATCCAGAATCCAGCGGCACACTGGAAGGTCTATGCGAACTATACGCTCGAATTTCTTCCAGGATGACCATAGCTGCTCCTTCACTACGGCCACCGAGAAATCTACTTGCCTGTCGGAAACCATGACCGATTCGGTCATCGATCTCAGGCTTGGCGAGCTCGCATCGAAGAACGACAAATCTGCGAAATCTTCTGCTACGGAGGAGGAGTTGCTTGATCTTTCTCAAGCTTTCAGTGATTTCTCGGCTTGTAGCAGTGATATTTCCGGGGAGCTGCAGAGGCTGGCGAGTTTGCCGTCGCCGGAGAATGTGCTGAAGGGTGGTGCTAGTGGCGAAGCAGACAAGGCGCCGGAGCCGGAGCCGTGCCTGGGGTTCCTGCAGAGAGAGAATTTCTCTACCGAGATTATTGAGAGTATTTCGCCGGAGGATCTTCAGCCGACGGTAAAGATCTGTATCGATGGGCTACAGTCACAGTCGGTTGCTGTGAAGCGATCTGCTGCTGCTAAGCTCAGGCTGCTGGCGAAGAATCGGGCGGATAATAGAGCTCTTATCGGCGAGTCTGGTGCGGTTCCCGCTTTGGTTCCCCTGCTTCGTTGCAGTGATCCGTGGACGCAGGAACACGCCGTGACGGCCTTGCTGAATCTCTCGCTGCACGAGGATAACAAGATGCTGATTACCAATGCAGGAGCTATTAAGTCACTGATTTATGTGCTCAAAACCGGAACAGAGACGTCGAAGCAGAACGCGGCATGTGCGCTTCTGAGCCTTGCTTTGGTTGAAGAAAACAAGAGTTCCATTGGGGCTAGTGGGGCAATACCACCGCTTGTTTCCTTGCTATTGAGTGGTTCCAGCAGGGGAAAGAAGGACGCTCTGACGACGATGTATAAGCTCTGCTCTATAAAGCCAAACAAGGAGAGGGCGGTCAGCGCCGGAGCAGTGAAGCCTCTTGTGGAGATGGTGGCAGAGCAAGGAACGGGTATGGCTGAGAAGGCAATGGTTATACTTAGTAGCTTGGCCGCTATTCCGGAAGGGAAGGAAGCAATTGTTGAAGAAGGAGGAATAGCTGCTCTTGTTGAGGCGATTGAAGATGGCTCTGTGAAGGGAAAGGAATTTGCTGTTTTGACACTTCTACAGCTATGTGCTGACAGTGTGAGGAATAGAGGGTTGCTTGTGAGGGAGGGCGGAATACCCCCTCTGGTTGCTCTTTCTCAGACCGGAAGTGTTAAAGCTAAGCACAAGGCAGAAACGCTTCTTGGATATCTGAGAGAATCAAGACAAGAAGCATCCACTTCAAGTCCTTAG 1392 0.5136 MVSLEDSHSNSNRFPLTRSYYSTTTSANNSSSRIQRHTGRSMRTIRSNFFQDDHSCSFTTATEKSTCLSETMTDSVIDLRLGELASKNDKSAKSSATEEELLDLSQAFSDFSACSSDISGELQRLASLPSPENVLKGGASGEADKAPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGLQSQSVAVKRSAAAKLRLLAKNRADNRALIGESGAVPALVPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAIKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLSGSSRGKKDALTTMYKLCSIKPNKERAVSAGAVKPLVEMVAEQGTGMAEKAMVILSSLAAIPEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCADSVRNRGLLVREGGIPPLVALSQTGSVKAKHKAETLLGYLRESRQEASTSSP 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4276g00003 463 SMART arm_5 371 411 IPR000225 GO:0005515
Pral4276g00003 463 SMART arm_5 330 370 IPR000225 GO:0005515
Pral4276g00003 463 SMART arm_5 207 247 IPR000225 GO:0005515
Pral4276g00003 463 SMART arm_5 248 288 IPR000225 GO:0005515
Pral4276g00003 463 SMART arm_5 289 329 IPR000225 GO:0005515
Pral4276g00003 463 SMART arm_5 413 453 IPR000225 GO:0005515
Pral4276g00003 463 Pfam Armadillo/beta-catenin-like repeat 209 246 IPR000225 GO:0005515
Pral4276g00003 463 Pfam Armadillo/beta-catenin-like repeat 291 329 IPR000225 GO:0005515
Pral4276g00003 463 SUPERFAMILY ARM repeat 175 452 IPR016024 -
Pral4276g00003 463 FunFam U-box domain-containing protein 4 164 316 - -
Pral4276g00003 463 Gene3D - 162 460 IPR011989 -
Pral4276g00003 463 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 218 260 IPR000225 GO:0005515
Pral4276g00003 463 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 341 383 IPR000225 GO:0005515
Pral4276g00003 463 MobiDBLite consensus disorder prediction 129 149 - -
Pral4276g00003 463 PANTHER U BOX DOMAIN-CONTAINING 136 451 - -
Pral4276g00003 463 FunFam U-box domain-containing protein 4 317 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4276g00003 Pral-Chr4276 13761 16336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4276g00003 155 456 U-box Gene Family AT2G23140 47.097 3.09e-83 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4276g00003 - - qsa:O6P43_031331 710.294