Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4276g00001 ATGGGAATGGACCCCGGCAAGCTCTTCATTGGTGGAATTTCATGGGACACAAATGAAGAACGACTCAGACAGTACTTTCAGAATTTTGGAGATGTGGTGGAGGCAGTGATAATGAAGGATCGGACCACAGGGCGTGCTCGTGGTTTTGGATTTATTGTTTTTTCTGATCCTTCTGTTGCTGAACAAGTTGTTATGGAAAAGCATGTCATAGATGGTAGAACTGTTGAAGCAAAAAAGGCCGTCCCTAGGGATGATCAGAACATTTCTAACAGAAGCAACAGCAGCATTCATGGATCACCCGGTCCAACCCGCACAAAGAAGATATTTGTTGGCGGGCTTGCGTCCACAGTTACCGAGAGTGACTTCAAGAAGTACTTTGACCAATTTGGAACAATTACAGATGTAGTTGTGATGTATGACCATAACACTCAAAGACCAAGAGGTTTCGGATTCATCACCTATGATTCTGAGGAAGCAGTGGATAAGGTTCTGTATAAAACATTTCACGAACTGAATGGTAAGATGGTTGAGGTTAAGCGGGCTGTTCCAAAGGAATTATCCCCAGGTCCAAGTAGAGGCCAATTAGCTGGATATAACTATGGTTTAAGTAGAGTTAGTGGCTTTTCTAATGGTCTCATTCAGGGATATAATCCTAGCTTGGTTGGAGGGCATGGACTTAGGGCAGATAGAAGATTCAGTCCTGTTACTGTTGGTCGAAATGGATATCCTCCATTAAGTCCCAGTTATGGGACAGGATTCAATTTTGAACCAGCATTTAGTCAAAATGGAAATTCAAACTTAACTTCTTCCCTTATGCTAGGACGGGCTTTGAACCCTTCATACAATGGAAATTCAAGCAGGTACCATAGTGTCATGGGGTATACTGGTGCAAGTGTAGGAAACAATTCAACAAATCAGAATTTGTGGGGGAACGAGAATATTAGCTTTGCTAGTAATCCTACAAATTCTAATGGTTTTCACGGGTATGGAGGTCAAAATTCAGGCATGGGTTCTTTTGGTGATATTGGAACACTGTGGAGTTCCTCCCCTAGTGCAGATCAAGCTGGAACTGTTGGCTCTGGCTATGGTAAGGGCCCTCTTAACTATGGCCCTGGAGATGTTAATTTTAGGCAAAAAGCAGTAGGATATGGAAAAGGTAGTGATGCCATTGCTGAATCAGTATCATCTTATGCTCTATCCAATGGCAGTTTTGATGGGGCATATAAAGAAATTTACGAAGCTGGGTCATTTTTTGGTGACCCCACCTGGAGCTCGTCACCTTCAGAACTAGAAGATACTGGTTCTCTTGGTTATGACCTTGGAAATGCTGTTTCAGATTTGATAAGCAAAAGCTCTGGTGGCCACATTGGGGCTTATGCTGTTGCTAATAGACAATCAAATAGAGGAATTGCTGCATAG 1419 0.4264 MGMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFIVFSDPSVAEQVVMEKHVIDGRTVEAKKAVPRDDQNISNRSNSSIHGSPGPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNGKMVEVKRAVPKELSPGPSRGQLAGYNYGLSRVSGFSNGLIQGYNPSLVGGHGLRADRRFSPVTVGRNGYPPLSPSYGTGFNFEPAFSQNGNSNLTSSLMLGRALNPSYNGNSSRYHSVMGYTGASVGNNSTNQNLWGNENISFASNPTNSNGFHGYGGQNSGMGSFGDIGTLWSSSPSADQAGTVGSGYGKGPLNYGPGDVNFRQKAVGYGKGSDAIAESVSSYALSNGSFDGAYKEIYEAGSFFGDPTWSSSPSELEDTGSLGYDLGNAVSDLISKSSGGHIGAYAVANRQSNRGIAA 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4276g00001 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Pral4276g00001 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Pral4276g00001 472 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Pral4276g00001 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pral4276g00001 472 Gene3D - 5 88 IPR012677 -
Pral4276g00001 472 SUPERFAMILY RNA-binding domain, RBD 101 203 IPR035979 GO:0003676
Pral4276g00001 472 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Pral4276g00001 472 CDD RRM2_Hrp1p 107 184 - -
Pral4276g00001 472 Gene3D - 103 189 IPR012677 -
Pral4276g00001 472 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pral4276g00001 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Pral4276g00001 472 MobiDBLite consensus disorder prediction 80 102 - -
Pral4276g00001 472 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 3 468 - -
Pral4276g00001 472 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pral4276g00001 472 SMART rrm1_1 107 179 IPR000504 GO:0003723
Pral4276g00001 472 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Pral4276g00001 472 MobiDBLite consensus disorder prediction 86 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4276g00001 Pral-Chr4276 6457 10584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4276g00001 8 185 Eukaryotic Initiation Factors Gene Family AT2G36660 30.688 4.27e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4276g00001 K14411 - cave:132171089 675.241