Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4275g00057 ATGTTATTAGATGTGGAAGTGATGGGAAACAAGAAGAGGAAGAGATGTGGGAGGGTTTTCAGATTCAAGAACTTCGGTGAGCCTGGATATCCTGTGGAGTTCAGAGGGCCATTTCGTGAGAACGTGAATGCTTTGCTTGAGTTTGCCAATTCAGAGTCTAAATACTTAGGTTTTGGAATGCCCATATGGTCTTTCCAACTTGAAGTTCATCGCCACCCTCCTTCTCATATCTTCTTGTTCGTCATTGAAGAAGCAACTGAGACATCCATGAACCGCCACTGCAAGCACTGTCAATATGTAGGATGGGGAAATCATTTTATATGCAATAAGAAGTATCACTTTGTGTTGCCTTCGAAGGAGACACTGGCTGCGAGTCTGAGCTGTGAAATGCCTTGTGAAGCAATTACGGGCAACAGCCATAATAACGGTAAGTCAAAATTAATAGAATTAGAGGGCCATATGATGCAAGCTGTTTTTCACTCTAATGGATTTGGGCATTTGCTCTCTGTCAATGGCCTTGAAACCGGGTCGGATCTTGCCGGACACCAGATCATGGACTTCTGGGATCGCCTGTGCACCGGACTGCAAGCAAGGAAAGTGAGCTTGAATGATTTGTCACAGAAAAAAGGCATGGAACTGAAACTTATAAACGGAATAGCATATGGTGAGCCATGGTTTGGACGGTGGGGGTACAAATTTGGAAGAGGATGCTTTGGTGTGACTGAATCTACGTACCAGAAAGCCATAGAAGCAATAAGAAGCATCCCGCTTTACCTTCTGAACCCCCAAATTATTGCAGGCAACTCTACTTGCTCCTACCATGACATACCAATCATCTTCTCAAGGTACCAAACACTCTCAGATCAAACCCTAGTCACACTTGGTGACTTGTTCCACTTCATGTTGGAGCTCAAGTCTCAGCTTCCTCGCCGGGAAAACTACGCCGCCGATTCCTATAACACCACCTTCTCTGTTGAAGCCAATTGCCGCTGGTCCCCCAAGAGGATCGAAATGGCTACTAGGGTTATTGTTGAAGCCTTGAAAAGAGCTGAGTTCAGGTGGATTTCAAGGCAAGAGGTTAGGGATGCTGCAAGAACCTACATTGGAGACACAGGTTTGCTAGATTTTGTGTTGAAATCTCTGGGAAATCACGTTGTTGGCAATTATATGGTTCGCCGGAGCTTGAATCCTGTCACCAAAGTTCTTGAATATTGCTTGGAAGACATCTCCAGTATTGTTTCCCCCAGTCATCATCAACAAGGTAGTAGTAATAATAATAATAATAATACTAACAGAAGCATAAAGGACAGGTACAAAATCACAAGGGCTCAAATCACGAAGGACATGTTTTATTTGTACAAGTACATCCTTAAAGACCCCAAACAAACACAAGGATCATCAATTTTCTCAGCAATCCCATTGGCAGCGAGAATAATTCTGGATACTAAGTATCTGATCAAAGAGTATTTCGGAGAGCTTCCTTTTCAAGCTGATCTTGGGATGACGGACGGAAAACTAAGTCTTCACTGTACAATAATGTTGAGAAACTACAACAATGTGTTAAGGATGCCACCCTACGAGTGTATCACATTGAGAAGTGATGCCACCATTGATGACCTGAAGCTAGAAGTTGAGAGAAACTTCAGAGAGATATATTGGGGATTAAGGAGTTTTTGTGTGGATTCGATTAAGAACTTGGAGGTTTGTGGTGGGAATGAGCTGGTGTTTGAGATGGTGGAAGTGGGTAGAAAGCTGGTGGTTGAAGGATGGATTGATAATAACGTTAATGGGGACATCATAAGTAACATCGGAGAGATTTGCGAAGTTAATGATAATAATGGGATGGTTGTGGAATGTGGTTGTGGGACCAAGGAAGACGATGGAGAGAGAATGGTGTGCTGTGATATTTGTGAAACTTGGCAGCATACGAGGTGTGTTCGGATTCCCAACGATGAACAAGTTCCTTCTATATTTCTCTGCAAAAGATGTGAACAAGAAATTGTTATGTTCCCCTCGTTGCCATAG 2025 0.4306 MLLDVEVMGNKKRKRCGRVFRFKNFGEPGYPVEFRGPFRENVNALLEFANSESKYLGFGMPIWSFQLEVHRHPPSHIFLFVIEEATETSMNRHCKHCQYVGWGNHFICNKKYHFVLPSKETLAASLSCEMPCEAITGNSHNNGKSKLIELEGHMMQAVFHSNGFGHLLSVNGLETGSDLAGHQIMDFWDRLCTGLQARKVSLNDLSQKKGMELKLINGIAYGEPWFGRWGYKFGRGCFGVTESTYQKAIEAIRSIPLYLLNPQIIAGNSTCSYHDIPIIFSRYQTLSDQTLVTLGDLFHFMLELKSQLPRRENYAADSYNTTFSVEANCRWSPKRIEMATRVIVEALKRAEFRWISRQEVRDAARTYIGDTGLLDFVLKSLGNHVVGNYMVRRSLNPVTKVLEYCLEDISSIVSPSHHQQGSSNNNNNNTNRSIKDRYKITRAQITKDMFYLYKYILKDPKQTQGSSIFSAIPLAARIILDTKYLIKEYFGELPFQADLGMTDGKLSLHCTIMLRNYNNVLRMPPYECITLRSDATIDDLKLEVERNFREIYWGLRSFCVDSIKNLEVCGGNELVFEMVEVGRKLVVEGWIDNNVNGDIISNIGEICEVNDNNGMVVECGCGTKEDDGERMVCCDICETWQHTRCVRIPNDEQVPSIFLCKRCEQEIVMFPSLP 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4275g00057 674 Pfam PHD-finger 619 665 IPR019787 -
Pral4275g00057 674 SUPERFAMILY FYVE/PHD zinc finger 606 666 IPR011011 -
Pral4275g00057 674 MobiDBLite consensus disorder prediction 415 434 - -
Pral4275g00057 674 CDD PHD_MMD1_like 618 663 - -
Pral4275g00057 674 ProSitePatterns Zinc finger PHD-type signature. 619 663 IPR019786 -
Pral4275g00057 674 SMART PHD_3 618 664 IPR001965 -
Pral4275g00057 674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 668 IPR013083 -
Pral4275g00057 674 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4275g00057 Pral-Chr4275 319976 322191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4275g00057 11 674 PHD Transcription Factor Family AT5G22260 53.323 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral4275g00057 PHD 1.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4275g00057 K26271 - gmx:100780210 962.214