Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4275g00042 ATGGCCGAGTTAGAGCCCGAGTCAGCGGCTCAGGCAACCGCAGGCGGAAGCGGTGGTGGTGACGTCAGAGTCTTAGATGAAAACATGCTGTTTACGATGGCTAACATCACAAGGATCATGAAGAAGGTCTTACCAGATGGCACGAGGATCACTCAAGATGCGAAAGAATTGGTGCAAGTGTCCGCGACGGAGTTCATCTTTTTCATCATGTCCGGCGCCCACCAAAACTTCCCTAACACCGATGAACGCAGAAGCCTTACCGGCGACGACATCCTCCAAGCCATGGACCTCATGGGATTCCACATGTACAGCACATTACTCGCTAGATACCTTTACAAGTATAGGGAGTGGGACGAGAATCAACGCCAGATGGCCGTTTGGATAGACGGCGATAGCGATGATGCACAGGAGGAAGATGCGGAGATAACTGGCGGCGCTGCTGATGGTGACGACAATCCTGATGATATGGAGGAGGAGCCGGAGATAGCTGGTGATGCTGGGATGGGAGGAGGCCAACAGAGGATTATCGGTGCCGGCAACGACGGGGATCCGAATCGCAGGGAGACGGAGGAAAAGGAGAAGACTGACGCTGTAATGGGAGAGAGGCAACAAAAGCAGACCGCCGGCGGTGGCGACTTCGACTTCGACGAAGACGACGTGCTTAAGTGGTTGAACTTGGACGCGTTTGAATCTGGAAATGGATCTTCAGGGTGA 714 0.5364 MAELEPESAAQATAGGSGGGDVRVLDENMLFTMANITRIMKKVLPDGTRITQDAKELVQVSATEFIFFIMSGAHQNFPNTDERRSLTGDDILQAMDLMGFHMYSTLLARYLYKYREWDENQRQMAVWIDGDSDDAQEEDAEITGGAADGDDNPDDMEEEPEIAGDAGMGGGQQRIIGAGNDGDPNRRETEEKEKTDAVMGERQQKQTAGGGDFDFDEDDVLKWLNLDAFESGNGSSG 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4275g00042 237 SUPERFAMILY Histone-fold 27 148 IPR009072 GO:0046982
Pral4275g00042 237 MobiDBLite consensus disorder prediction 132 162 - -
Pral4275g00042 237 MobiDBLite consensus disorder prediction 132 216 - -
Pral4275g00042 237 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 21 184 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pral4275g00042 237 MobiDBLite consensus disorder prediction 181 200 - -
Pral4275g00042 237 Gene3D Histone, subunit A 21 163 IPR009072 GO:0046982
Pral4275g00042 237 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4275g00042 Pral-Chr4275 241313 242026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4275g00042 13 116 CCAAT-HAP3 Transcription Factor Family AT4G14540 40.385 1.72e-20 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pral4275g00042 CBFD_NFYB_HMF 1.4e-12 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4275g00042 K08065 - tet:TTHERM_01194650 85.1149