Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4275g00041 ATGGCCGCGTCAAGGGATCAGCGAAACTCAGCCGGCAGAGGCAGCGGCGGAAGAGAGCGAACCTTTTCGCTTACGAAAGTCGGAGATACCATGAAGAAGGTGTTACCGCCAAAGACGAGGATCTCTAAAGAAGTGAAAGAAATGGTCGAACAATGCTCGACGGAGTTCATCGTCTTCATCACCAGCGAAGCCGTCAAGAACAATAAGGACTTCACGCTCACCGGCGACGGCATCATCTCGGCGCTGGCTCACCTCGGATTCGATGATTACGTGGAACCACTCCAGATTTACCTGCAAAAGTATATGAAGCCTTTTGAGGCGGCGTATAAGGCGATGGCGGGGACGAGTACCAGCGCTGTGACGGAAGGGCGGCGTAGCGAGACGAGGGACGGCGACTATCCAAATGGGATTCTTAGGGTTGGGACTGCTGAGGATTTTCAAGACTTGACCGCTCTCATTCTGGTTAATATTTACTAA 477 0.5241 MAASRDQRNSAGRGSGGRERTFSLTKVGDTMKKVLPPKTRISKEVKEMVEQCSTEFIVFITSEAVKNNKDFTLTGDGIISALAHLGFDDYVEPLQIYLQKYMKPFEAAYKAMAGTSTSAVTEGRRSETRDGDYPNGILRVGTAEDFQDLTALILVNIY 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4275g00041 158 Gene3D Histone, subunit A 17 133 IPR009072 GO:0046982
Pral4275g00041 158 SUPERFAMILY Histone-fold 19 118 IPR009072 GO:0046982
Pral4275g00041 158 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 19 104 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pral4275g00041 158 MobiDBLite consensus disorder prediction 1 22 - -
Pral4275g00041 158 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 66 IPR003958 -
Pral4275g00041 158 PRINTS CCAAT-binding transcription factor subunit A signature 49 67 - -
Pral4275g00041 158 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Pral4275g00041 158 MobiDBLite consensus disorder prediction 1 16 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4275g00041 Pral-Chr4275 238735 239211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4275g00041 9 101 CCAAT-HAP3 Transcription Factor Family AT4G14540 44.118 2.99e-23 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pral4275g00041 CBFD_NFYB_HMF 1.3e-07 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4275g00041 K08065 - aof:109828031 94.7449