Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4275g00038 ATGGACGACCTCTTCACCGTCGACGATTTCCCTTACCACGTGGCCCCCTTTCCCGACGCCTCTGACCTCCTTTACGCCCATCCCACGCCGGGTTTTCACCCTCCCGACGTCGCCGACCACCGCCGGCTTCTCAACCCCACGCCACAGAAGCTCCGCCCCATCCGGAGCCTCGACCGGTCTTCTTCCCCGCCGGACCTTGAGATTCCTGAGAATGGAGGGCTCGCCGGACCGTCTGACGATGTGGGTTACCTTTGTCATCAGTCAAGTCAGAACCCTGAGTTTCTGGATCAGCGAGTTGTGTCTTGCGAGGAGCTGAGGAAAGAAGCTTCCGATGATGTCGTCGGAAATGACTGCCTCCAGACGGAGAATCCGGCAGTGCTCCGGCCGTGTCATACTTGTGAACCGAAGCAGGAACCTGGTTCATCTTGGGACAATGATGGTGATTCGTCTGAAAGTGTGGAAGAACCCGGGAGTGGAAAGAAAAGAGAAAAGACAATGATGAAGTTTGAAGCTTTTCTAGAAAATTTGGCGATGAAGGTTATGGAGAAGCAAGAGCAGATGCATAAGCAACTGCTGGATATGATAGAAAAGAAAGAAAGGGAAAGAGCTATGAGAGAAGAAGCTTGGAAGCAAAAGGAGATGGAAAGGAGTAAAAAGGATGAGGAGGCCAGAGCTCAAGAAAAATCTAACAACCTAGCTCTCATATCATTAATTCAGAATTTACTGGGCCATGAAATTCAAATCCCCCAACCGGCAGCAACCAGCTCAAGAGAAGAGGATGAAGGTGAAGCGAACATCCAAAAGGATTTCAAGAATGATCAGAGTAATAATAGATGGCCAGAAGCTGAAGTACAAGCACTCATAACTCTAAGAACTTCTTCAGAACACAAATTTCAAGGGATGGGATCCAAAGTATCTTTATGGGAGGAGATATCTAAAGCAATGCATAATATGGGTTACAATCGTTCTGCAAAGAAGTGCAAGGAGAAATGGGAAAACATCAATAAGTATTATAAGAGAACAATGGAGAGTGGGAAGAAGCGCCGGCTAAACAGTAAAGCTTGCCCATACTTCGATGAGTTAGACATTCTATACCGAAATCGGCTCCCAAATATTGGGAAAGCCTTTAGCGATACCTCAATGTCATCAAAGACTGAAAAGGAGTAA 1167 0.473 MDDLFTVDDFPYHVAPFPDASDLLYAHPTPGFHPPDVADHRRLLNPTPQKLRPIRSLDRSSSPPDLEIPENGGLAGPSDDVGYLCHQSSQNPEFLDQRVVSCEELRKEASDDVVGNDCLQTENPAVLRPCHTCEPKQEPGSSWDNDGDSSESVEEPGSGKKREKTMMKFEAFLENLAMKVMEKQEQMHKQLLDMIEKKERERAMREEAWKQKEMERSKKDEEARAQEKSNNLALISLIQNLLGHEIQIPQPAATSSREEDEGEANIQKDFKNDQSNNRWPEAEVQALITLRTSSEHKFQGMGSKVSLWEEISKAMHNMGYNRSAKKCKEKWENINKYYKRTMESGKKRRLNSKACPYFDELDILYRNRLPNIGKAFSDTSMSSKTEKE 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4275g00038 388 FunFam Trihelix transcription factor GT-2 279 340 - -
Pral4275g00038 388 ProSiteProfiles Myb-like domain profile. 271 335 IPR001005 -
Pral4275g00038 388 MobiDBLite consensus disorder prediction 129 165 - -
Pral4275g00038 388 Coils Coil 211 231 - -
Pral4275g00038 388 Gene3D - 279 340 - -
Pral4275g00038 388 PANTHER FI21293P1 125 375 - -
Pral4275g00038 388 Pfam Myb/SANT-like DNA-binding domain 277 362 IPR044822 -
Pral4275g00038 388 MobiDBLite consensus disorder prediction 35 81 - -
Pral4275g00038 388 MobiDBLite consensus disorder prediction 203 226 - -
Pral4275g00038 388 SUPERFAMILY Homeodomain-like 276 346 IPR009057 -
Pral4275g00038 388 CDD GT1 277 341 - -
Pral4275g00038 388 Coils Coil 181 201 - -
Pral4275g00038 388 MobiDBLite consensus disorder prediction 250 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4275g00038 Pral-Chr4275 203438 206054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4275g00038 8 367 Trihelix Transcription Factor Family AT5G47660 36.453 2.43e-51 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pral4275g00038 Myb_DNA-bind_4 6e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4275g00038 - - pcin:129285231 634.024