Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4273g00008 ATGCTCCAAAAAGTTTTATTGATCATATTGGGAGTATTAATTTCCAAAGCTATCAGACTCATCTCTCATTGGCGCAATGGTAACCAACCTGCTGCTATTGATGCTAGTTCTGAGGATGATGTTATTTTGACTCAAATGAATTCTCCTCCTGCTACCAAGTATGATGTGTTCCTTAGCTTTAGAGGAGAAGACACTCGCCACAATTTTGCAAGTTATCTTTGTAAAGGACTTCAAAATGCAGGCATTCACACTTTTATGGATCACGAACTCCGCAAAGGAGAATCAATCTCACCTGTTCTTCAAAGAACAATAGAGGAATCAGAAATATCTATGATTATTTTCTCCCAAAATTATGCTTCTTCAACTTGGTGTCTGGATGAGCTTGTTCACATATTAGAATGCAAGCGTAAATTTGGAAGGGTTGTGATACCTATTTTCTATAACATAGATCCTTCAAACATACGCAAACAAAATGGGAATTTTGGAAAAGGATTTCATGTATTGAAGCAAAGATTTAAAGGCAACCAACAAAAATTGCAAAAGTGGAGAAATGCTTTAATCCAATCCACAAGTTTCTCTGGATGGGATTCCCACAGTACCAGACCTGAATTCAAACTTATTGAAGAGATTGTCAAAGATATTTCGAGAAAGTTGGACTATGCGTCATCATCTCATCTTGAAGGACTCATTGGCATTGCTCGACATGTTAAAAACATTCGAAGGCTTCTAACTGGGGCTCGCATTGTAGGAATATGGGGTATGGGTGGTGCTGGTAAGACCACACTTGCTAAAGCCATATTTCAAGAGTTGAGAGCTCAATTTGACACTTTCTCCTTTATTGAAAATGTCAAAGAGCAATTAAAAAGAATTAGTTTGGATGAGCTACAGAAGAATTGCCTCAAAGAATTATTAAAAGATGAGGGCATTAGCATCTATGACATAAAATCCACTTTTGTGAAAAATAGGCTTCAGAGCAAAAAAATTCTTCTTATACTTGATGATGTGGACAAGTCAATAGTAGCGGCAGATTTAACCAAGGTACTTGATTGGTTTGGTGAAGGAAGTAGAATTATTATCACATCAAGGGACATGCAAGTGCTGAAGAATGCTTCTGCTGCATTTTCAACATATCATGTTCCAGACTTGGGTTTTGATAATGCTTTTCATCTCTTTAGTTTGAAAGCATTCAAGCAAGATGAGCCATCTAAAGGTTACATGGAGTTATCAAAATCAGTAGTGAAATATTGTCACGGAAACCCATTAGCCCTAGTAGTGCTAGGTTGCTTCCTCTATGGCAGAGGAAAAGAAGAGTGGGAAAGTGCTTTGGAAAAACTAAATCAAGCTCCACCAAAGGATATTGTTGATGTTTTGAAGTTGAGTTTCGATGGACTTGATGACAAACAGCAGGAAGTGTTTCTTGACCTAGCATTCTTAATCAAGCAAGGAGTTGATATTTCTTTGAACCTAACGAGACAATTATATAGCTCTTCTATGCATATTGAGATTAGTACTCTTAGAGAGAAGTCCCTCATTTCATTTGATAATAATCATAATGATCTTATTGAGATGCACGATCTTGTGAGGAAAATGGGCCTTGAAATTTCAAGCCAACAATTATTCTCTGGTTCCAAAATCCCTGTTCGACTATGGAAGCATAAGGATATTTATCGGTTTTTCAACAATGACCAGCAGGCAATTGAGGCAATTCGATGCATGTCATTGGATGCAACCAAGATAGAAAGCATGACATTGAGGGCTAGTCATTTTAGAACGATGCATTATTTAATGTCTCTTCAAGTTTACAAGTCACATTGGGAAAATCCTTCAAATAATATCCAACAGCTTTGGGAGCAGCAATTTCCAAATCTGAAGGAAATAAATCTAACAGGTTCAAAGAATCTCATGGCTCTCCCAGATATGTCTCAAGCCCCTAAAGTTAAATCTTTGCATTAA 1953 0.3707 MLQKVLLIILGVLISKAIRLISHWRNGNQPAAIDASSEDDVILTQMNSPPATKYDVFLSFRGEDTRHNFASYLCKGLQNAGIHTFMDHELRKGESISPVLQRTIEESEISMIIFSQNYASSTWCLDELVHILECKRKFGRVVIPIFYNIDPSNIRKQNGNFGKGFHVLKQRFKGNQQKLQKWRNALIQSTSFSGWDSHSTRPEFKLIEEIVKDISRKLDYASSSHLEGLIGIARHVKNIRRLLTGARIVGIWGMGGAGKTTLAKAIFQELRAQFDTFSFIENVKEQLKRISLDELQKNCLKELLKDEGISIYDIKSTFVKNRLQSKKILLILDDVDKSIVAADLTKVLDWFGEGSRIIITSRDMQVLKNASAAFSTYHVPDLGFDNAFHLFSLKAFKQDEPSKGYMELSKSVVKYCHGNPLALVVLGCFLYGRGKEEWESALEKLNQAPPKDIVDVLKLSFDGLDDKQQEVFLDLAFLIKQGVDISLNLTRQLYSSSMHIEISTLREKSLISFDNNHNDLIEMHDLVRKMGLEISSQQLFSGSKIPVRLWKHKDIYRFFNNDQQAIEAIRCMSLDATKIESMTLRASHFRTMHYLMSLQVYKSHWENPSNNIQQLWEQQFPNLKEINLTGSKNLMALPDMSQAPKVKSLH 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4273g00008 650 SMART till_3 53 192 IPR000157 GO:0007165
Pral4273g00008 650 Pfam NB-ARC domain 246 449 IPR002182 GO:0043531
Pral4273g00008 650 SUPERFAMILY Toll/Interleukin receptor TIR domain 49 195 IPR035897 -
Pral4273g00008 650 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 54 649 IPR044974 GO:0006952
Pral4273g00008 650 SMART AAA_5 245 385 IPR003593 GO:0016887
Pral4273g00008 650 SUPERFAMILY "Winged helix" DNA-binding domain 452 558 IPR036390 -
Pral4273g00008 650 PRINTS Disease resistance protein signature 248 263 - -
Pral4273g00008 650 PRINTS Disease resistance protein signature 416 430 - -
Pral4273g00008 650 PRINTS Disease resistance protein signature 618 634 - -
Pral4273g00008 650 PRINTS Disease resistance protein signature 322 336 - -
Pral4273g00008 650 ProSiteProfiles TIR domain profile. 52 218 IPR000157 GO:0007165
Pral4273g00008 650 Pfam TIR domain 53 225 IPR000157 GO:0007165
Pral4273g00008 650 Gene3D - 50 219 IPR035897 -
Pral4273g00008 650 Gene3D - 220 376 IPR027417 -
Pral4273g00008 650 FunFam Disease resistance protein (TIR-NBS-LRR class) 50 220 - -
Pral4273g00008 650 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 475 IPR027417 -
Pral4273g00008 650 Gene3D - 382 465 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4273g00008 Pral-Chr4273 70004 76109 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4273g00008 54 606 WRKY Transcription Factor Family AT4G12020 28.571 2.19e-47 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4273g00008 - - pcin:129286024 769.229