Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4271g00063 ATGGAACATCGAGCACCATCCTCTTCTACCACTTATAAATGGAAGTATGATGTGTTCCTTAGTTTTCATGGCGATGATACTCGCTCAGCATTCATCAGCCATCTCCATGATTCTCTGTGTCGAGGAGGATTTAGTGTCTTTATTGATTGTGAAATCGGGATCGGAGAAAAGATCACGGATGACCTTTTCAGAGCTATAGAGGAATCAAGAATTGCCATGGTAGTTTTCTCAGAGAACTACGCAGACTCAACATTTTGCTTGAAAGAACTTGAAAAGATACTGGAGTGCTTCAAGAAACAAAGCCTGTTGATATATCCAGTGTTTTATCATGTGGATCCATCAGAACTACGACGTCCCAGAGGAAGCTATGCAGCAGCATTGGCTCGACAGGAGGAAAGATTCAAGTACAATCGGCACACGGTGGAAACATGGAAGCGGAATCTGTCTCAAGCTGCTGAATTCAAAGGCTTTCATCTCAAACCCAAGATTTCAAATGAACGAAAGTGTATTAAAAAGATCATTAAGGATGTTGCTGCTAGGATAAAGCCGCCAGAGCGAATTTGGGGAGCTGGTGGAATAGGCAAATCAACTATTGCAAGAGCTGTATATAACTCCATTGCTGATAATTTTGAAGGCTTATGTTTTCTTTCTGATGTGAGAATGCATTCTGAAAATATAAATACTGGTTTGCCGCATCTTCAAGAGACATTATTGCGTAAATTAGTCAAGGGAAAAACATTCAAATTGGATGATTATCATGAAGGAATACCAATAATAAAACGTAGGCTTAGCCAGAAGAAAAAGATTCTTTTGATTCTTGATGATGTTGACAAATCACAACAATTAGAAGCACTTGCTGGAAGTTGTGATTGGTTTGGCTGTGGAAGTAGAATCATCATCACCACTAGGGACAAGCAATTATTAGTAAACCATAATGATGTTTCAGGCATTTATGATGTTGAGGAATTAAATTACAAGGAATCTCTTGAGTTGCTCAGTTGGCATGCTTTTAATAAAGAAGACGCGGATTCCAAGTACATGAAGGTTTGCAAGTGTGCAATACATTATTCATGTGGCTTTCCATTAGCTTTAGAACTGATTGGTTCTAGCTTGCATGGTAAAGGAGTTGATCATTGGAATTCTGCATTGCGTCAATTCAAAAGGACACCTCACGGACAAGTTTTTAATGCCTTCAAATTAAGCTATGATAGCTTAGAAAAACAAAACCAAGCAGACCCAAAACAAGTTTTCCTTGACTTGGCTTGTTTTTTCAATGGTGAGAAATTAGCACATGTCATTGATAAGTTGCAATGTTTTCATGGAAACGATGTAAAATATGCTATTGAAGCAGTGCTGGTGGATAAATCCCTTATAAAGATTAAAGGGGATTGTGTAACAATGCATGGCTTAATAGAAGATGCAGGCAAAGAGATCGTTCAACAAGAATCATTATATGAGCCTGGTCAACGTAGCAGACTATGGTTCTATCAAGATATTCTTCATGTCTTACAACAGGGCACAGGGACTAATGAAGTTCAAGCCATAATTCTAGACTTACCTGAAGGGTTAGAAGTACAATGGAGTGGAGAGGAATTCATGAAGATGACAAGTCTCAAAATGCTCGTGATAAGAAAGAAGTTTCACAATTTAACCAGTATGAATTTAAGCAATTGTGAATATCTACAACAAACACCAGACCTATCTGAAGCTCCCAATTTAAGAGAATTGCGGCTTGATGATTGCAAAGATTTAACTACAATTGATGGTTCAGTTGGACGTTTGAAAAAATTGACAGAATTGAGTGCTATGCGATGTAAAAAGTTGGAGAATTTGCCATCTCATCTCAAGTTGGAATCTCTTAAACATCTGAACCTCTTTGGTTGTTCAAGTCTTCAGATATTTCCAACAGTAGAGGTCGAGATGAAAGAAATTCAAACACTTGATTTAGATATGACAGCAATTACTGAATTGCCATCTTCAATTTGCAATCTTATTGGACTTGAAACCTTAAATATGGACAGATGTCCTAATCTTAAGAAGCTACCAACTAGCATTTGTACATTACCAAACCTTTGGAAACTAACGGCAGATTCTTGTAAAGAAATGAGTCATTTTGAGCAGTGTGCAGGAGGAAATAAAGCATGCTCAGATTGCTCCACAATGTCATCGAAAATGGAACAGCTTTTTTTCTCGAATTGCAATTTATCAGATGAATCTCTTGCTTTCTGTCTTCCTCACTTCACTAATATGCATATTGGAAGGATGCCGCCAAACTTGGAAAAATTTAGTGCCGAATGTTGCACATCATTGACTAAGTTATCCAAAAGCGAAGTGTTGAAGCAGGCATTCAACTTTCAATATGGGAGAAGACACTTTATTTTTCCCGGAAGAAAACTTCCAAGAAGGCTTCATTACTATACTCAGGGAACTTTTGTCTCATTTTGGGTTCGTAACGTGTTTCCAACGACTTTTCTATGGATTCTTGTGAAAGATGACCAGGATTATGTCTGCAATTGCAAATTCTCAGTGCACATCAATGACTCCAGGAAGTCGGGTGCTATTTCTTCCATGCGGCTTTCTTTACAGTCAAAAATAAAGACTAATCACATATATATATGTGATCTGCAAAGCGTATTTCACGATACTGAACTCCCCCATCGAGATAAGTGGAATCAAGTGAAGGTTTCCGCCAAGAGCACAAAAGAAATTTATTTCGGCGTTCATGTATCAAATCTATCAAGTAACTCAGAAAATATTCAACTCATGGATCCTAGAAGATACATAATTGATCACAACAGCTTGTTGCAAAAAATACAAGAACAAGAAGATTTGGAAGAATTCGAGGAAGACATGAATTTGGATTCAGCCTACTCAACAAAATCTGCAGAATCAACTGAGGACCCCATGTATTATCACGAGAGAGATATTATGAAGACGCTTCGACCTTATTGGGATGTAAAATGTTTGAAAGTTGGTCGTCGTTCCTACGAGAACTTGGTTGAGTTGCACCAGATTGACTGCAAAAACCGTGGGAGAATTGCTCCCCTCGGGCAACTACCTTCTCTTAGGTCTTTAACTATTGGAGGATTACAAGCGTAG 3099 0.3817 MEHRAPSSSTTYKWKYDVFLSFHGDDTRSAFISHLHDSLCRGGFSVFIDCEIGIGEKITDDLFRAIEESRIAMVVFSENYADSTFCLKELEKILECFKKQSLLIYPVFYHVDPSELRRPRGSYAAALARQEERFKYNRHTVETWKRNLSQAAEFKGFHLKPKISNERKCIKKIIKDVAARIKPPERIWGAGGIGKSTIARAVYNSIADNFEGLCFLSDVRMHSENINTGLPHLQETLLRKLVKGKTFKLDDYHEGIPIIKRRLSQKKKILLILDDVDKSQQLEALAGSCDWFGCGSRIIITTRDKQLLVNHNDVSGIYDVEELNYKESLELLSWHAFNKEDADSKYMKVCKCAIHYSCGFPLALELIGSSLHGKGVDHWNSALRQFKRTPHGQVFNAFKLSYDSLEKQNQADPKQVFLDLACFFNGEKLAHVIDKLQCFHGNDVKYAIEAVLVDKSLIKIKGDCVTMHGLIEDAGKEIVQQESLYEPGQRSRLWFYQDILHVLQQGTGTNEVQAIILDLPEGLEVQWSGEEFMKMTSLKMLVIRKKFHNLTSMNLSNCEYLQQTPDLSEAPNLRELRLDDCKDLTTIDGSVGRLKKLTELSAMRCKKLENLPSHLKLESLKHLNLFGCSSLQIFPTVEVEMKEIQTLDLDMTAITELPSSICNLIGLETLNMDRCPNLKKLPTSICTLPNLWKLTADSCKEMSHFEQCAGGNKACSDCSTMSSKMEQLFFSNCNLSDESLAFCLPHFTNMHIGRMPPNLEKFSAECCTSLTKLSKSEVLKQAFNFQYGRRHFIFPGRKLPRRLHYYTQGTFVSFWVRNVFPTTFLWILVKDDQDYVCNCKFSVHINDSRKSGAISSMRLSLQSKIKTNHIYICDLQSVFHDTELPHRDKWNQVKVSAKSTKEIYFGVHVSNLSSNSENIQLMDPRRYIIDHNSLLQKIQEQEDLEEFEEDMNLDSAYSTKSAESTEDPMYYHERDIMKTLRPYWDVKCLKVGRRSYENLVELHQIDCKNRGRIAPLGQLPSLRSLTIGGLQA 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4271g00063 1032 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 156 IPR035897 -
Pral4271g00063 1032 Pfam TIR domain 15 177 IPR000157 GO:0007165
Pral4271g00063 1032 SUPERFAMILY "Winged helix" DNA-binding domain 393 504 IPR036390 -
Pral4271g00063 1032 Gene3D - 151 315 IPR027417 -
Pral4271g00063 1032 Gene3D Ribonuclease Inhibitor 511 787 IPR032675 -
Pral4271g00063 1032 PRINTS Disease resistance protein signature 184 199 - -
Pral4271g00063 1032 PRINTS Disease resistance protein signature 263 277 - -
Pral4271g00063 1032 PRINTS Disease resistance protein signature 357 371 - -
Pral4271g00063 1032 PRINTS Disease resistance protein signature 615 631 - -
Pral4271g00063 1032 ProSiteProfiles TIR domain profile. 14 181 IPR000157 GO:0007165
Pral4271g00063 1032 SMART till_3 15 154 IPR000157 GO:0007165
Pral4271g00063 1032 Gene3D - 1 150 IPR035897 -
Pral4271g00063 1032 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 182 - -
Pral4271g00063 1032 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 410 IPR027417 -
Pral4271g00063 1032 SUPERFAMILY L domain-like 515 778 - -
Pral4271g00063 1032 Pfam NB-ARC domain 187 404 IPR002182 GO:0043531
Pral4271g00063 1032 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 713 IPR044974 GO:0006952
Pral4271g00063 1032 Gene3D - 322 406 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4271g00063 Pral-Chr4271 494064 501178 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4271g00063 16 705 WRKY Transcription Factor Family AT4G12020 28.931 2.41e-67 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4271g00063 - - pcin:129311747 937.947