LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4271g00054	ATGTTGGCCCAGAAGAAGAATGATTCATCCCAAAAGCTCTCACATTCAGAAACCATCATTGATGCTGCTTACGGAAAGAACGGTCTATTGGGGATGACCTCAACTCCGACTGTTCCAAGATCCATGCCGGATGAAATTTGCCCGGCTTCTCTCATCAAGAATGACACAGACATGGCCGAGAAGCTGGAAGTTGTAACTGATAAATCTGAAACGATGTTGGGTTTGAGAAAGAGTACTGTACGGGGAAATTGTTCACATCTCAAAGCCCGTGTAGCCTCATTCTTGGAAGCCACCAGGGCTGCAAAACTTGTGGTGAGGGGAGGAGCTCTTGTTTCCTTGATTGCAGTGCCTTTACGGGGCACAATTATAAGGCCTCCATTTCGTCTCCACTTGGAAATAAGGAGACCCAACATGGACACGTCCCACTGGTTTGCCTCAAACAAGCTTCTTGTACTTGTTCTTGCTGTTTTCCACTTGTTACTAGGTCTCGCAGCTTCACAAATGCCGTTCTTTGAATGGATCATGGACGCCATAATTTTGGTTGAACTTCTCCCACTACTTTACTGGCTGCTGCGACCTCTGCCTCTCTACGTCTTCTCAAGAAAGGAGGTCAACCAGAAAGAAGCTATCAAAGTTGATAAGTTCATTCAAGAAGATGATTCTGCTGTTAATTCAGTCTCTCATACCACCAATCCTCGCCCATGGGAAAGAGTGGAACGTATTGGGGCTGGTGGATATGGGAATGTTTATGTTGCACGCCACAGGGAAACCCGAGAGTTATTTGCAGTAAAGGAACTGAATGACATTCACAAACTTACAAAGGAAATCAAAATTCTCAGCCAACTGGAACATCCAAACATTGTAAAGTATTACGGAAATGAAACAATTGGACGCCACATTTTTCTATACATGGAATACGTCCAATCAGGTTCACTGAGGAAATATATCTCGGACAGAAGGGTTTTACCTGAACTTTTAATCCGAAATTTCACCAAGCAAATTCTCTCTGGGTTGGATTACCTGAGTAATAAAAGAGTTGTTCACAGGGACATAAAGCCGGCCAATCTACTTGTCGATTCTAACAACATAGTAAAGCTAATTGACTTCGGTTCGGCTAAGCATCCAGCAGAATCTGTGGGCCAGCACTCCATGCCGGGAACTCCATATTATGCAGCCCCAGAGGTTCTTCAAAATATAGAATATAGGACGTGGCATGAAGCTTCTGCTGCTGATATATGGAGTCTGGGTTGTGTAATCATAGAAATGTTCACAGGGGAGCATCCTTGGCCTCATGTTGATCAGGTGCAGGCTTACTATAAAATTTGTTTTGATCATCAACATCCGCCCATACCGAAAGAGTTGAGCAAAGAGGGTAAAGATTTTCTTCAACTCTGCTTCCGAAAAACTCCGGCCGAGCGGCCTTCTGCTGCAGCATTACTAGAGCATCCCTTTGTAAAAGTACACAACTTAGCTTGCTGGTGGAAGAAAGTACGAGGCTTGATATTGGGAGTATTGGGAGATTTTAGCATGACACACGCACAGACATAG	1548	0.4425	MLAQKKNDSSQKLSHSETIIDAAYGKNGLLGMTSTPTVPRSMPDEICPASLIKNDTDMAEKLEVVTDKSETMLGLRKSTVRGNCSHLKARVASFLEATRAAKLVVRGGALVSLIAVPLRGTIIRPPFRLHLEIRRPNMDTSHWFASNKLLVLVLAVFHLLLGLAASQMPFFEWIMDAIILVELLPLLYWLLRPLPLYVFSRKEVNQKEAIKVDKFIQEDDSAVNSVSHTTNPRPWERVERIGAGGYGNVYVARHRETRELFAVKELNDIHKLTKEIKILSQLEHPNIVKYYGNETIGRHIFLYMEYVQSGSLRKYISDRRVLPELLIRNFTKQILSGLDYLSNKRVVHRDIKPANLLVDSNNIVKLIDFGSAKHPAESVGQHSMPGTPYYAAPEVLQNIEYRTWHEASAADIWSLGCVIIEMFTGEHPWPHVDQVQAYYKICFDHQHPPIPKELSKEGKDFLQLCFRKTPAERPSAAALLEHPFVKVHNLACWWKKVRGLILGVLGDFSMTHAQT	515

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4271g00054	515	FunFam	Maternal embryonic leucine zipper kinase	233	511	-	-
	Pral4271g00054	515	Gene3D	Transferase(Phosphotransferase) domain 1	229	497	-	-
	Pral4271g00054	515	CDD	STKc_MAPKKK	235	485	-	-
	Pral4271g00054	515	ProSiteProfiles	Protein kinase domain profile.	235	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4271g00054	515	PRINTS	Tyrosine kinase catalytic domain signature	454	476	IPR001245	GO:0004672\|GO:0006468
	Pral4271g00054	515	PRINTS	Tyrosine kinase catalytic domain signature	410	432	IPR001245	GO:0004672\|GO:0006468
	Pral4271g00054	515	PRINTS	Tyrosine kinase catalytic domain signature	340	358	IPR001245	GO:0004672\|GO:0006468
	Pral4271g00054	515	PRINTS	Tyrosine kinase catalytic domain signature	304	317	IPR001245	GO:0004672\|GO:0006468
	Pral4271g00054	515	SMART	serkin_6	235	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4271g00054	515	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	346	358	IPR008271	GO:0004672\|GO:0006468
	Pral4271g00054	515	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	222	489	-	-
	Pral4271g00054	515	Pfam	Protein kinase domain	236	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4271g00054	515	SUPERFAMILY	Protein kinase-like (PK-like)	227	490	IPR011009	-
	Pral4271g00054	515	ProSitePatterns	Protein kinases ATP-binding region signature.	241	264	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4271g00054	Pral-Chr4271	348106	351073	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4271g00054	235	486	MAP Kinase Kinase Kinase	AT5G66850	50.566	2.36e-80	262

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Pral4271g00054		Pkinase	2.8e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4271g00054	-		-	pcin:129285400	275.789