LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4271g00053	ATGTTGGCCCAGAAGAAGAATGATTCATCCCAAAAGCTCTCACATTCAGAAACCATCATTGATGCTGCTTACGGAAAGAACGGTCTATTGGGGATGACCTCAACTCCGACTGTTCCAAGATCCATGCCGGATGAAATTTGCCCGGCTTCTCTCATCAAGAATGACACAGACATGGCCGAGAAGCTGGAAGTTGTAACTGATAAATCTGAAACGATGTTGGGTTTGAGAAAGAGTACTGTACGGGGAAATTGTTCACATCTCAAAGCCCGTGTAGCCTCATTCTTGGAAGCCACCAGGGCTGCAAAACTTGTGGTGAGGGGAGGAGCTCTTGTTTCCTTGATTGCAGTGCCTTTACGGGGCACAATTATAAGGCCTCCATTTCGTCTCCACTTGGAAATAAGGAGACCCAACATGGACACGTCCCACTGGTTTGCCTCAAACAAGCTTCTTGTACTTGTTCTTGCTGTTTTCCACTTGTTACTAGGTCTCGCAGCTTCACAAATGCCGTTCTTTGAATGGATCATGGACGCCATAATTTTGGTTGAACTTCTCCCACTACTTTACTGGCTGCTGCGACCTCTGCCTCTCTACGTCTTCTCAAGAAAGGAGGTCAACCAGAAAGAAGCTATCAAAGTTGATAAGTTCATTCAAGAAGATGATTCTGCTGTTAATTCAGTCTCTCATACCACCAATCCTCGCCCATGGGAAAGAGTGGAACGTATTGGGGCTGGTGGATATGGGAATGTTTATGTTGCACGCCACAGGGAAACCCGAGAGTTATTTGCAGTAAAGGAACTGAATGACATTCACAAACTTACAAAGGTAGAATCTATAAAAAATGAAATCAAAATTCTCAGCCAACTGGAACATCCAAACATTGTAAAGTATTACGGAAATGAAACAATTGGACGCCACATTTTTCTATACATGGAATACGTCCAATCAGGTTCACTGAGGAAATATATCTCGGACAGAAGGGTTTTACCTGAACTTTTAATCCGAAATTTCACCAAGCAAATTCTCTCTGGGTTGGATTACCTGAGTAATAAAAGAGTTGTTCACAGGGACATAAAGCCGGCCAATCTACTTGTCGATTCTAACAACATAGTAAAGCTAATTGACTTCGGTTCGGCTAAGCATCCAGCAGAATCTGTGGGCCAGCACTCCATGCCGGGAACTCCATATTATGCAGCCCCAGAGGTTCTTCAAAATATAGAATATAGGACGTGGCATGAAGCTTCTGCTGCTGATATATGGAGTCTGGGTTGTGTAATCATAGAAATGTTCACAGGGGAGCATCCTTGGCCTCATGTTGATCAGGTGCAGGCTTACTATAAAATTTGTTTTGATCATCAACATCCGCCCATACCGAAAGAGTTGAGCAAAGAGGGTAAAGATTTTCTTCAACTCTGCTTCCGAAAAACTCCGGCCGAGCGGCCTTCTGCTGCAGCATTACTAGAGCATCCCTTTGTAAAAGTACACAACTTAGCTTGCTGGTGGAAGAAAGTACGAGGCTTGATATTGGGAGTATTGGGAGATTTTAGCATGACACACGCACAGACATAG	1566	0.4393	MLAQKKNDSSQKLSHSETIIDAAYGKNGLLGMTSTPTVPRSMPDEICPASLIKNDTDMAEKLEVVTDKSETMLGLRKSTVRGNCSHLKARVASFLEATRAAKLVVRGGALVSLIAVPLRGTIIRPPFRLHLEIRRPNMDTSHWFASNKLLVLVLAVFHLLLGLAASQMPFFEWIMDAIILVELLPLLYWLLRPLPLYVFSRKEVNQKEAIKVDKFIQEDDSAVNSVSHTTNPRPWERVERIGAGGYGNVYVARHRETRELFAVKELNDIHKLTKVESIKNEIKILSQLEHPNIVKYYGNETIGRHIFLYMEYVQSGSLRKYISDRRVLPELLIRNFTKQILSGLDYLSNKRVVHRDIKPANLLVDSNNIVKLIDFGSAKHPAESVGQHSMPGTPYYAAPEVLQNIEYRTWHEASAADIWSLGCVIIEMFTGEHPWPHVDQVQAYYKICFDHQHPPIPKELSKEGKDFLQLCFRKTPAERPSAAALLEHPFVKVHNLACWWKKVRGLILGVLGDFSMTHAQT	521

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4271g00053	521	ProSiteProfiles	Protein kinase domain profile.	235	491	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4271g00053	521	SMART	serkin_6	235	491	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4271g00053	521	PRINTS	Tyrosine kinase catalytic domain signature	346	364	IPR001245	GO:0004672\|GO:0006468
	Pral4271g00053	521	PRINTS	Tyrosine kinase catalytic domain signature	416	438	IPR001245	GO:0004672\|GO:0006468
	Pral4271g00053	521	PRINTS	Tyrosine kinase catalytic domain signature	460	482	IPR001245	GO:0004672\|GO:0006468
	Pral4271g00053	521	PRINTS	Tyrosine kinase catalytic domain signature	310	323	IPR001245	GO:0004672\|GO:0006468
	Pral4271g00053	521	FunFam	Maternal embryonic leucine zipper kinase	233	517	-	-
	Pral4271g00053	521	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	222	495	-	-
	Pral4271g00053	521	Gene3D	Transferase(Phosphotransferase) domain 1	229	503	-	-
	Pral4271g00053	521	Pfam	Protein kinase domain	236	491	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4271g00053	521	ProSitePatterns	Protein kinases ATP-binding region signature.	241	264	IPR017441	GO:0005524
	Pral4271g00053	521	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	352	364	IPR008271	GO:0004672\|GO:0006468
	Pral4271g00053	521	SUPERFAMILY	Protein kinase-like (PK-like)	227	497	IPR011009	-
	Pral4271g00053	521	CDD	STKc_MAPKKK	235	491	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4271g00053	Pral-Chr4271	348106	351073	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4271g00053	235	492	MAP Kinase Kinase Kinase	AT5G66850	49.811	3.90e-81	265

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Pral4271g00053		Pkinase	7.4e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4271g00053	-		-	pcin:129285400	282.337