Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4271g00020 ATGGTTTCTCTTTCTGAAGATTCCATCTTGGTCTTGAAGGGTTTCATGGCTGGTTTTATGCAGATCACGGCTATAAGAACGGAGGAATGTGTTGCTGATTGCTTTGTCAGACTGCTCTACTTAGCGGAGGGTCATTTAGAACCGAACATGAACTTTTTTGCCTATCACCTCCGATATATTCCAACTTTTTTGGCTCTTGGCATCTTCTATGCTCTATTTCCCATATCCTCAGTCATATCCACTGTGTTCATCACCTTCTTTTTATATATTTACGCAGAGCTACTCTGCAAAATCGCAGACCAGCCTCTTCTTCGAACACACAGTCAGTTAATCCAACAGATTCCTGATGCTGCTAATAATAGTTCAATCCCTTCTATCACCAACTTTAGCCAAGGGGAAACCCAGGATCCTGTTGGTCAACAGAATTATAGCGCTCCTCATTCAGTCTTTTCTACCTCAAATTTTAGCCAATGGGATATATGGGATCCCCCTATTGGGGGCGGTGGATTCGCATTTGTTCATGTTGCCTCTAACAGAGTAACCGGAGACCGGTGTGCTGTAAAGAAACTGAAAGACCCTGACAATTTTGACAACGCAAGATTTCTTATTCAGGAAATCGAAATTCTCAGCCAACTGGAGCATCCAAACATTATAAAGTATCGTGGGAGTGAAAGAGTTGGAAACCAGATATGGCTATTAACGGAATATGTTCAAACTGGGACACTCACAAAGTACATAAGTGAACTAGGCGCTTTCCAAGAACGTTTTGTTCGAGATATCACTGTCCAAATTCTCTCTGCATTGGCTTACTTACACAGCAAAAGAATAGTCCACAGGGATATCAAGCCCGATAACGTACTCGTCGATTCTTATGGCATTGTAAAGCTTATTGACTTTGGTTTGGCTAAACATGTAAGTACTTGA 924 0.4167 MVSLSEDSILVLKGFMAGFMQITAIRTEECVADCFVRLLYLAEGHLEPNMNFFAYHLRYIPTFLALGIFYALFPISSVISTVFITFFLYIYAELLCKIADQPLLRTHSQLIQQIPDAANNSSIPSITNFSQGETQDPVGQQNYSAPHSVFSTSNFSQWDIWDPPIGGGGFAFVHVASNRVTGDRCAVKKLKDPDNFDNARFLIQEIEILSQLEHPNIIKYRGSERVGNQIWLLTEYVQTGTLTKYISELGAFQERFVRDITVQILSALAYLHSKRIVHRDIKPDNVLVDSYGIVKLIDFGLAKHVST 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4271g00020 307 Gene3D Transferase(Phosphotransferase) domain 1 157 307 - -
Pral4271g00020 307 Pfam Protein kinase domain 164 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4271g00020 307 SMART serkin_6 164 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4271g00020 307 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 124 305 - -
Pral4271g00020 307 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Pral4271g00020 307 ProSiteProfiles Protein kinase domain profile. 159 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4271g00020 307 ProSitePatterns Protein kinases ATP-binding region signature. 165 189 IPR017441 GO:0005524
Pral4271g00020 307 SUPERFAMILY Protein kinase-like (PK-like) 163 305 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4271g00020 Pral-Chr4271 104177 107990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4271g00020 165 306 MAP Kinase Kinase Kinase AT5G66850 49.660 1.85e-38 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pral4271g00020 Pkinase 1.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4271g00020 - - pcin:129285400 253.447