Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4262g00039 ATGAACAGTTTCAGCTTCAACGAGGAAGTTTCGGAGTTTCGGACCTCTCGGCAATTAAAGCAGAGAAGAAGAAAAAGAAAAGGTAAGCAAAACGACGATAGTCCCAAAAGAAAGCTCGAGGAAGTTGAGGTCCAGTATAGCATAGAACCGAAAACGAAGAAGAGTAAGAAGAACAAGAAGTCGAAGATAAGCGCAGGGGAAACCTTAGCCGTCGAAACAAATGACGCCGAGAACGGCGGAGAGGATGAGTCGGTGAGAGATGGGCACGTGGTGGTTACTGGAAAGAATATTAAGGATGAGAAGTATGCGCCCACAAAGACTTTTTGTGCATCGGGGCTTCCAAAGGAAGTCTTGGAGTGCTGCAAAAGTTTTGAAAAGCCGTCTCCTATTCAATCCCGAGCGTGGCCTTTCCTGTTGAATGGTCGTGATTTAATCGGCATTGCGGCTACTGGTTCAGGAAAAACATTGGCATTTGGAATACCGGCTATGATGCATGTTTTGAGCAAGCGCAAGAGTAAAGCGTCAAAGGGTCGGAATCCTCTCTGCCTTGTGCTCTCTCCCACTAGGGAGCTGGCTCAACAAATTTCAGATGTTATGTGTGATGCTGGGAGGTCTTGTGGTGTGGAATCTGTTTGTTTGTATGGTGGAACCTCCAAAGGGCCGCAAATATCTTCGTTAAAATCTGGCATTGACATTGTCATCGGAACTCCTGGTCGTATAAAGGATCTGATTGAAATGGGTGTTTGTTCTTTGAAAGAGGTTTCGTTTGTGGTGCTTGATGAAGCAGATCGAATGCTTGACATGGGATTTGAGCAAGCAGTTCGCTCAATACTGGGTCAGACTTGTTCTGTTCGTCAAATGGTTATGTTCAGTGCTACATGGCCTCTACCAGTCCATCAATTAGCTCAAGAGTTTATGGATCCTAATCCTGTGAAAGTTGTTGTAGGATCAGAGGACTTAGCTGCCAATCATGATGTCATGCAAATAGTCGAGGTCTTGGATGATCGTTCACGAGATAAACGCCTGGTTGCTTTGCTTGAAAAGTACCACAAATCTCAGAGGAATAGAGTATTGGTTTTTGTCTTGTACAAATTGGAAGCCACACGAGTTGAAAAGATGCTTCATCAAGGGGGTTGGAAGGTTGTCTCAATACATGGGGACAAGGCACAATATGAACGCACAAAGGCACTGTCGTTATTCAAGAATGGAAGCTGTCCTTTGATGATTGCCACTGATGTGGCTGCACGGGGATTGGATATTCCGGATGTTGAAGTTGTGATCAATTACAGTTTTCCTCTAACTACAGAAGATTATGTTCATAGAATTGGGAGGACAGGACGAGCTGGGAAGAAAGGCGTTTCCCATACGTTTTTTACTCAGCAGAATAAGGGACTTGCTGGGGAGCTAGTGAATGTTTTAAGAGAAGCAAATCAAATTGTGCCTGATGCCTTGTTGAAGTTTGGCACGCATGTAAAGAAAAAGGAGTCCAAACTGTACGGAGCTCATTTCAAGGAGATTACTGCCGATGCTCCCAAGTCAAAGAAGATAACATTTGACGACTCTGACGAAGACTAA 1575 0.4444 MNSFSFNEEVSEFRTSRQLKQRRRKRKGKQNDDSPKRKLEEVEVQYSIEPKTKKSKKNKKSKISAGETLAVETNDAENGGEDESVRDGHVVVTGKNIKDEKYAPTKTFCASGLPKEVLECCKSFEKPSPIQSRAWPFLLNGRDLIGIAATGSGKTLAFGIPAMMHVLSKRKSKASKGRNPLCLVLSPTRELAQQISDVMCDAGRSCGVESVCLYGGTSKGPQISSLKSGIDIVIGTPGRIKDLIEMGVCSLKEVSFVVLDEADRMLDMGFEQAVRSILGQTCSVRQMVMFSATWPLPVHQLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDKRLVALLEKYHKSQRNRVLVFVLYKLEATRVEKMLHQGGWKVVSIHGDKAQYERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTQQNKGLAGELVNVLREANQIVPDALLKFGTHVKKKESKLYGAHFKEITADAPKSKKITFDDSDED 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4262g00039 524 MobiDBLite consensus disorder prediction 1 64 - -
Pral4262g00039 524 Gene3D - 318 491 IPR027417 -
Pral4262g00039 524 MobiDBLite consensus disorder prediction 32 52 - -
Pral4262g00039 524 SMART ultradead3 123 329 IPR014001 -
Pral4262g00039 524 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 312 IPR014001 -
Pral4262g00039 524 SMART helicmild6 368 449 IPR001650 -
Pral4262g00039 524 CDD SF2_C_DEAD 326 458 - -
Pral4262g00039 524 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 337 488 IPR001650 -
Pral4262g00039 524 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 258 266 IPR000629 -
Pral4262g00039 524 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 106 132 IPR014014 GO:0003724
Pral4262g00039 524 Gene3D - 82 317 IPR027417 -
Pral4262g00039 524 Pfam Helicase conserved C-terminal domain 340 449 IPR001650 -
Pral4262g00039 524 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 59 484 - -
Pral4262g00039 524 FunFam ATP-dependent RNA helicase RhlB 315 492 - -
Pral4262g00039 524 CDD DEADc 124 313 - -
Pral4262g00039 524 Pfam DEAD/DEAH box helicase 129 298 IPR011545 GO:0003676|GO:0005524
Pral4262g00039 524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 462 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4262g00039 Pral-Chr4262 213234 219189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4262g00039 104 478 Eukaryotic Initiation Factors Gene Family AT3G19760 32.095 3.44e-55 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4262g00039 K14811 - gmx:100806057 817.379