Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4262g00009 ATGGTGGAAGGAAGAGTTTGTTTGCCCAAGGAAGCTAGAAATATACTAGAACCTTCAAAGTGTAAAAAGCTTCACCGAGCAAAATCTTCGACTGCCAACAACACAAGTGTTGCTAATATGATGACAAGAAGCGGAGGAGATGCTTTAAGGGCTTCGTCATCATGTGGTGTGAGGTTGCATGGTAATGCAAACGCCTTTTCCAAGAGGAAGGTGGATAAGTTTGACATGAGTGATCTAGAATGGACTGAAAAGATTCCCGAGTGTCCTGTGTACTCCCCAACAAAGGAGGAATTCGAGGACCCTTTGGTTTATTTGCAAAAGATAATTCCTGTGGCTTCAAGATACGGTATATGCAAGATTATTTCTCCTTTGCATGCTTCAATTCCTGCTGGAGTCGTGTTAATGAAGGAGAAAGCAGGATTTAAGTTTGCAACTACAGTACAGCCACTTCGCCTTGCTGAGTGGGATACTGAAGACAAAGTCACATTTTTCATGAGTGGAAGAAACTATACATTCCGCGATTTTGAAAAAATGGCGAACAAGGTTTTTGCACGTAGATATTGCAGTGCCGGATGTCTTCCTGCCTCATTTTTGGAAAAAGAGTTTTGGCATGAAATTAGCTGTGGAAAGATGGAAAGTGTAGAATATGCATGTGATGTAGATGGTAGTGCCTTTTCCTCTTCTCCCAATGATCAACTTGGGAGCAGCAAATGGAATTTGAAGAAGCTTTCTCGGCTGCCCAAATCCATTTTGCGGCTCTTGGAAACAGTAATTCCGGGAGTAACAGAACCCATGTTATACATTGGAATGCTGTTTAGTATGTTTGCTTGGCATGTTGAGGATCACTATTTGTACAGTATTAATTATCATCACTGTGGAGCATCAAAAACTTGGTACGGAATTCCGGGTCATGCAGCTCTGGATTTTGAAAGGGTGGTGAGAGAACATGTGTATACTAAAGATATTCTGTCAAATGAAGGGGAAGATGGAGCCTTCGACGTTCTTCTGGGGAAAACAACTCTGTTTCCTCCAAATATTTTGTTGGAACATGAAGTGCCGGTCTACAAAGCTGTTCAAAAACCAGGAGAGTTTATTGTTACCTTTCCTAGAGCGTATCACGCTGGTTTTAGTCATGGTTTTAACTGTGGAGAGGCAGTGAATTTTGCCATTGGCGATTGGTTTCCTTTAGGGGCCATTGCCAGCAGGCGATATGCACATCTAAACAGAGTTCCTCTGCTACCTCACGAAGAACTTTTATGCAAAGAAGCAATGCTCCTCTATACAAGTTTAGAACTCGAAGATTCAGATTTTCCTTCTGCAGACTCGATGTTTCATAATAGCATCAAGATATCTTTTGCTAATTTGATGCGCTTCGAGCATTGTACTCGCTGGTTATTAGTTAAATCTGGGGCTTGCACAAATGTCTCCTCACACTCTCATGGCTCAATTCTCTGTAGTCTCTGCAAACGCGACTGCTATGTGGCATATGTTGACTGTGACTGTCACATGCATCCATTGTGTCTTCGACATGATATCGAATCTCTTGACTTCACCTGTGGGAGCAAACACACTCTTTACTTGAGGGAAGATACTGAAGATATGGAAGCTGCGGCCAAGAGGTTTGAACAGGAAGATGGTATATTGGATGAGATAGTTAAGCAGATCAAGGCTGACAGTAACATTTATTCGTATCCCTTGTCAAGTATGTTTCAGAGAGCTGAGGCCGATGGATATACCCCTTATTGCGAGATAAAATTTGAACCTGTTGAATCTTCTCACTCAGGCTCAGATCACTTAATGAATATTCAAGAGTGTGCTATTCAAAGTCAATGGGCTTTGAGGCATTGCTCAGGATCAGAATATCACAAACCTGAAGTGTCTGATTTTTCCTTCGTTTCTGCTGCTTCTGCTCTTTGCTCTCTTTCAGACCCTCTTGAGAGTTATTCTTATGCTACTAAAAATGATGAGGGGCGTGCAAAGTCGGGCATCATTAATTCTGAGGAGCTTTGTGAAAGAATGTCCAGTAGTGTATGTGAATCTTTAGTATCCCCTACACGGAATCGCAACGGCTCGATTAAACCTCAGGGGGGTGATCTTTATAGATTAGAGATGAAATCCATGGTGAATAATGACAGTGATGATTCTGATTCAGAGATATTTAGGGTGAAGCGGCCTTCTTCTTTGAAGGCAGAGAGGAGAAATGGGAATGATCAGATGTGTCCCAAGCATTCTGACCACCAGGGACTAAAACGATTGAAGAAAAACTCTGATGAAGGAAGAAGCGGTCAACTAATAGTAGATTACAGCAGAAGCAGTGAATCAGATTACAACAACTGGAGGTACCCGGCAAATCACAAATTTGATAGCGAAAGCGGTACGAGGGAAAGATATCCGAAGGTTAATAATGGCATTCCCATTTCCATAAGGTACAGGAAATTAGGAAACGAGGACTTGAGTGGCCATGGAGATCACCACAAGAGGAATTGGTTACAACAGAGTATAATGGAGCCATCATCTCCCACGGAGGTTGGGATTGGACCAAAGCGGCTTAAGGTGCGAGGCCCTTCATTCCTGAGCTTATAG 2583 0.4243 MVEGRVCLPKEARNILEPSKCKKLHRAKSSTANNTSVANMMTRSGGDALRASSSCGVRLHGNANAFSKRKVDKFDMSDLEWTEKIPECPVYSPTKEEFEDPLVYLQKIIPVASRYGICKIISPLHASIPAGVVLMKEKAGFKFATTVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPASFLEKEFWHEISCGKMESVEYACDVDGSAFSSSPNDQLGSSKWNLKKLSRLPKSILRLLETVIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALDFERVVREHVYTKDILSNEGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIVTFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYAHLNRVPLLPHEELLCKEAMLLYTSLELEDSDFPSADSMFHNSIKISFANLMRFEHCTRWLLVKSGACTNVSSHSHGSILCSLCKRDCYVAYVDCDCHMHPLCLRHDIESLDFTCGSKHTLYLREDTEDMEAAAKRFEQEDGILDEIVKQIKADSNIYSYPLSSMFQRAEADGYTPYCEIKFEPVESSHSGSDHLMNIQECAIQSQWALRHCSGSEYHKPEVSDFSFVSAASALCSLSDPLESYSYATKNDEGRAKSGIINSEELCERMSSSVCESLVSPTRNRNGSIKPQGGDLYRLEMKSMVNNDSDDSDSEIFRVKRPSSLKAERRNGNDQMCPKHSDHQGLKRLKKNSDEGRSGQLIVDYSRSSESDYNNWRYPANHKFDSESGTRERYPKVNNGIPISIRYRKLGNEDLSGHGDHHKRNWLQQSIMEPSSPTEVGIGPKRLKVRGPSFLSL 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4262g00009 860 SMART JmjN_1 87 128 IPR003349 -
Pral4262g00009 860 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Pral4262g00009 860 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Pral4262g00009 860 SMART cupin_9 235 405 IPR003347 -
Pral4262g00009 860 FunFam Lysine-specific demethylase isoform A 83 432 - -
Pral4262g00009 860 PANTHER LYSINE-SPECIFIC DEMETHYLASE 80 743 - -
Pral4262g00009 860 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Pral4262g00009 860 MobiDBLite consensus disorder prediction 724 763 - -
Pral4262g00009 860 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Pral4262g00009 860 Gene3D Cupin 88 447 - -
Pral4262g00009 860 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Pral4262g00009 860 Pfam jmjN domain 89 121 IPR003349 -
Pral4262g00009 860 MobiDBLite consensus disorder prediction 724 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4262g00009 Pral-Chr4262 38604 45198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4262g00009 85 555 JUMONJI Transcription Factor Family AT2G34880 31.685 2.68e-63 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pral4262g00009 JmjC 7.8e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4262g00009 - - gmx:100798611 1274.23