Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4260g00072 ATGCATACAGGAGAAAGGCAAGCGGCGAAGATGAGAATGGCGTATTTAAGGTCAATGCTGAGTCAAGATATAAGTCTTTTTGACACAGAGGCTTCAACTGGAGAGGTCATTTCTGCTATAACCAGTGACATTATTGTCGTTCAAGATGCATTATCAGAGAAGGTAGGGAATTTCATCCACTACATTAGCAGATTCATATCGGGATTTATTATCGGATTCGCGCGAGTATGGCAGATCAGTTTAGTGACACTCTCCATTGTGCCCTTAATTGCCCTTGCTGGCGGTCTCTACGCTTACGTCACAGTTGGGCTAATTGCCAAAGTTCGAAAATCCTACGTGAGAGCTGGTGAAATCGCTGAAGAAGTGATAGGCAATGTTAGAACAGTACAGGCATTTGCAGGAGAAGAAAGAGCTGTAAGATCATACAAAACGGCCCTAATGAACACCTACAAGAACGGTCGAAAAACGGGATTAGCAAAGGGTTTAGGACTTGGCTCCATGCACTGTGTTCTTTTTCTTTCATGGTCCCTGCTTGTTTGGTTCACTAGCATCGTTGTTCACAAGAATATCGCCAATGGTGGAGAGTCTTTCACTACCATGCTCAACGTTGTTATCGCTGGCCTGTCACTTGGACAGGCAGCGCCAGATATCACCGCATTTGTACGAGCAAAGGCAGCTGCTTATCCCATTTTTCAGATGATAGAGAGGGACACAGTGAGCAAAATCAGTTCAAAAACTGGTTATAAATTAAGCAAAGTAGAGGGTCACATTCAATTCAAAGGCGTTTGTTTCAGTTACCCATCTCGCCCTGAAGTAGTTATCTTCAACAACCTCAATATTGACATTCCTTCAGGGAAAGTTGTGGCCCTTGTTGGGGGAAGTGGTTCTGGAAAGAGCACCATTATATCGCTGATTGAGCGCTTCTACGAACCCTTTTCTGGACAGATCTTACTGGACAGGAATAACATTGCGGAACTTGATCTCAAATGGCTAAGGCAGCAAATCGGGTTGGTTAATCAAGAACCTGCCCTTTTTGCTACAAGCATCAGGGAGAACATACTGTATGGAAAAGATGATGCCACTCTTGAAGAACTTCAACGAGCTGTGAAGCTTTCAGATGCCCAGTCTTTCATTAACAATCTTCCTGATAGATTAGAAACTCAGGTTGGTGAGAGAGGGATACAACTATCAGGTGGACAAAAGCAAAGGATTGCTATATCTCGTGCTTTAGTGAAGAATCCATCAATCCTTTTATTAGATGAAGCAACCAGTGCTCTGGATGCAGAGTCTGAGAAGAGCGTACAGGAGGCTCTTGATCGTGTCATGGTAGGTCGGACAACTGTAATAGTAGCACACAGACTTTCCACAATCAGAAACGCAGACGTGATTGCCGTTGTTCAAGGAGGGAAGATTGTTGAAACTGGCAGCCATGATGAGCTCATTGCCAATGCGAATAGTGCATATGCATCTCTTGTTCAACTCCAAGAGGCAGCTTCTTTGCAAAGACACCCTTCGGTAGGTCCTAGCTTGGGGCGGCCGTCAAGCATAAGGTACTCAAGAGAATTATCCCGTACAACGACAAGCTTAGGTGGTAGTTTTCGATCAGATAAAGAATCTATTGGTCGTGTCGATGCTGATGAAGTGGATAGTATGGGCAAGACAAGGCATGTTTCTGCAAAAAGATTATACTCCATGATAGGGCCTGATTGGTACTATGGGGTTATAGGGACTTTCTGTGCATTTATTGCTGGAGCACAGATGCCTCTTTTTGCTCTAGGAATATCTCATGCTCTGGTATCATATTACATGGACTGGGATACTACCTGTCGTGAGGTCAAGAAAATTGCTTTCCTCTTTTGTGGGGCAGCAGTTGTAACCGTCATTGTCCATGCAATTGAACACCTTTGTTTTGGAATCATGGGTGAGCGACTTACTCTTCGTGTCCGAGAAGCTCTGTTTTCTGCTATCTTGAAGAATGAAATTGGCTGGTTCGATGATGCGGACAACACTAGTTCTATGCTTTCATCACGTCTAGAGACTGATGCAACTTTGTTACGAACTATAGTTGTTGATCGGTCTACAATTCTCTTACAGAATGTTGGTCTAGTCGTTGCTTCATTTATTATTGCCTTCTTGTTGAACTGGAGACTAACGCTTGTTGTCTTGGCCACATATCCTTTGGTCATTAGTGGTCACATTAGTGAGAAACTTTTCTTTCAAGGATACGGTGGCAACTTGAGCAAAGCATATCTGAAGGCCAACATGCTGGCTGGGGAGGCTGTGAGTAACATACGCACTGTTGCTGCATTTTGTTCTGAAGATAAAGTCCTTGAACTTTATGCTAATGAGCTTGTTGATCCTTCCAAGCGTTCATTAAACCGGGGTCACATTGCAGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGTCTTGCCTTGTGGTATGGTTCCGTACTGATGGAAAAGGAGCTTGCCAGCTTTAAATCAATAATGAAGTCGTTTATGGTTTTGATAGTAACAGCACTGGCCATGGGGGAGACTTTGGCTCTCGCTCCAGACCTTTTGAAGGGGAATCAAATGGTTGCATCAGTTTTTCATCTGATGGATAGAAAGTCAGGAGTAATGAGTGATACTGGAGAAGATCTAAAGACGGTAGAGGGAACTATTGAGCTTAAAAGTGTCAATTTCAGCTACCCTTCGAGGCCAGATGTGATCGTTTTTAAGGATTTTAACCTTAAAGTGCCTTCAGGCAGTAGTCATGCCTTAGTGGGGCAAAGTGGTTCTGGTAAAAGTTCAGTTGTCTCCCTTATACTCAGGTTCTATGATCCAACTTCTGGGAAGGTGATGATTGACGGGAAGGACATCAAGAGAGTCAATCTGAAATCACTGAGGAGACACATTGGTCTGGTGCAACAAGAACCAGCTCTGTTTGCAACATCAATATATGAAAACATTCTATATGGAAAGGAAGGAGCCTCTGAATCAGAAGTAATTGCAGCAGCTCAACTCGCAAACGCTCACAGCTTCATAAGCGGTCTTCCTGAGGGCTACTCCACCAAAGTGGGTGAGCGGGGAGTTCAGCTATCTGGTGGCCAAAGGCAAAGGATAGCCATAGCCAGAGCTGTTCTGAAGAACCCAGAAATCTTGCTTCTTGATGAAGCCACAAGTGCACTGGACGTGGAATCAGAGCGTGTCGTTCAGCAAGCACTAGACAGATTGATGCAGAACAGAACAACATTGATGGTGGCACATAGACTGTCCACAATAAGAAATGCAGATCAAATCTCAGTTTTGCAGGATGGGAAGATAGTGGAGCAAGGGTCTCACTCAAGTCTTATAGAAAACAAAAACGGAGCATACTTTAAATTAGTCAACCTTCAACAGCAACAGAATCAAAAATAA 3414 0.4367 MHTGERQAAKMRMAYLRSMLSQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFIHYISRFISGFIIGFARVWQISLVTLSIVPLIALAGGLYAYVTVGLIAKVRKSYVRAGEIAEEVIGNVRTVQAFAGEERAVRSYKTALMNTYKNGRKTGLAKGLGLGSMHCVLFLSWSLLVWFTSIVVHKNIANGGESFTTMLNVVIAGLSLGQAAPDITAFVRAKAAAYPIFQMIERDTVSKISSKTGYKLSKVEGHIQFKGVCFSYPSRPEVVIFNNLNIDIPSGKVVALVGGSGSGKSTIISLIERFYEPFSGQILLDRNNIAELDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEELQRAVKLSDAQSFINNLPDRLETQVGERGIQLSGGQKQRIAISRALVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADVIAVVQGGKIVETGSHDELIANANSAYASLVQLQEAASLQRHPSVGPSLGRPSSIRYSRELSRTTTSLGGSFRSDKESIGRVDADEVDSMGKTRHVSAKRLYSMIGPDWYYGVIGTFCAFIAGAQMPLFALGISHALVSYYMDWDTTCREVKKIAFLFCGAAVVTVIVHAIEHLCFGIMGERLTLRVREALFSAILKNEIGWFDDADNTSSMLSSRLETDATLLRTIVVDRSTILLQNVGLVVASFIIAFLLNWRLTLVVLATYPLVISGHISEKLFFQGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEDKVLELYANELVDPSKRSLNRGHIAGIFYGISQFFIFSSYGLALWYGSVLMEKELASFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFHLMDRKSGVMSDTGEDLKTVEGTIELKSVNFSYPSRPDVIVFKDFNLKVPSGSSHALVGQSGSGKSSVVSLILRFYDPTSGKVMIDGKDIKRVNLKSLRRHIGLVQQEPALFATSIYENILYGKEGASESEVIAAAQLANAHSFISGLPEGYSTKVGERGVQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTLMVAHRLSTIRNADQISVLQDGKIVEQGSHSSLIENKNGAYFKLVNLQQQQNQK 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4260g00072 1137 PANTHER ABC TRANSPORTER B FAMILY 1 498 IPR039421 -
Pral4260g00072 1137 FunFam ABC transporter B family member 1 553 861 - -
Pral4260g00072 1137 ProSitePatterns ABC transporters family signature. 396 410 IPR017871 GO:0005524|GO:0016887
Pral4260g00072 1137 Gene3D ABC transporter type 1, transmembrane domain 516 742 IPR036640 GO:0005524|GO:0016020
Pral4260g00072 1137 Gene3D ABC transporter type 1, transmembrane domain 748 890 IPR036640 GO:0005524|GO:0016020
Pral4260g00072 1137 Gene3D ABC transporter type 1, transmembrane domain 2 499 IPR036640 GO:0005524|GO:0016020
Pral4260g00072 1137 Pfam ABC transporter 276 424 IPR003439 GO:0005524
Pral4260g00072 1137 Pfam ABC transporter transmembrane region 1 205 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4260g00072 1137 Pfam ABC transporter transmembrane region 575 846 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4260g00072 1137 FunFam ABC transporter B family member 1 1 256 - -
Pral4260g00072 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 495 IPR027417 -
Pral4260g00072 1137 Gene3D - 247 496 IPR027417 -
Pral4260g00072 1137 CDD ABC_MTABC3_MDL1_MDL2 893 1130 - -
Pral4260g00072 1137 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 257 493 IPR003439 GO:0005524
Pral4260g00072 1137 Pfam ABC transporter 912 1060 IPR003439 GO:0005524
Pral4260g00072 1137 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 574 860 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4260g00072 1137 CDD ABC_MTABC3_MDL1_MDL2 257 495 - -
Pral4260g00072 1137 SMART AAA_5 920 1106 IPR003593 GO:0016887
Pral4260g00072 1137 SMART AAA_5 284 476 IPR003593 GO:0016887
Pral4260g00072 1137 FunFam ABC transporter B family member 19 247 496 - -
Pral4260g00072 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 886 1131 IPR027417 -
Pral4260g00072 1137 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 222 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4260g00072 1137 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 893 1129 IPR003439 GO:0005524
Pral4260g00072 1137 CDD ABC_6TM_Pgp_ABCB1_D2_like 563 876 - -
Pral4260g00072 1137 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 230 - -
Pral4260g00072 1137 ProSitePatterns ABC transporters family signature. 1032 1046 IPR017871 GO:0005524|GO:0016887
Pral4260g00072 1137 Gene3D - 891 1135 IPR027417 -
Pral4260g00072 1137 SUPERFAMILY ABC transporter transmembrane region 2 235 IPR036640 GO:0005524|GO:0016020
Pral4260g00072 1137 FunFam ABC transporter B family member 4 883 1136 - -
Pral4260g00072 1137 SUPERFAMILY ABC transporter transmembrane region 560 874 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4260g00072 Pral-Chr4260 498650 505932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4260g00072 555 1136 Calmodulin-binding Proteins AT2G36910 41.990 7.34e-127 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4260g00072 K05658 - gmx:100819045 1964.5