Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4260g00062 ATGGCTTCTCTTGGGAACCCCAGAAGTTGGGTTCCATACATGAACAATAAAGACTGTTCTCAAGGCTTCTGTAGTCTGTACTGTCCACAATGGTGTTACATAGTGTATCCTCCTCCTCCTCCCTTTGAATTTCCCGAAGACAATTCAAGCCCCAATTTTTCACCTCTGGTTATAGCAGTCATTGGAATCTTGGCCAGTGCTCTTCTTCTTGTGAGCTACTATACCATAATCTCCAGGTACTGTGGCAACCCAGAATCTGCAGATAGACAGCATCACGACCCTTCCAGTGATGAGTTGGAACAATTTCACGATCGTTCCCTTCATGAACCATGGCACGCATCACGTAATGGTTTAGACGAGGCTCTGATCAAGTCCATCACAGTTTGTAAGTACAAGAAAGAAGATGGGTTAGTGGCAGTATCAGATTGCTCTGTTTGTCTCAGTGAGTTCAAAGACGATGACAGTATCAAGCTCTTGCCAAAGTGTAGCCATGCTTTTCATATCCCTTGTATTGACACGTGGCTCAAATCTCACTCCTCTTGCCCTCTCTGTCGTGCCAGTATCTTCACCTTCAACGGTTCAGCTCTTCTGGCATCTGATTCCACGATGGAGAATTCAACTTTCCAGGAAAATCAACCCGGGAATGATAACAATGAAGTGGTGGGTTTAGCAGTGGAAGAAGAAAGTGAAGTAACCATACAACGCGGTACAGCTCCGAAGCCTACATTGCGTGCTATGAGCGATTTGGGGAATTTGCAGGGAAGGCATAATGTGATTGAGATTAAAGATGAAGAAGACGTTGAACCGTTTAGAAGGTCAGTTTCTATGGACCATTCATTTCAAAGTGGCAACCGAGTAGAAGAAGAAGGCTCTGTTAATGAAGCAGGTCCATCAAAGAGATCTCGAGGAGAAAGCATCAAATCTAACAGCAGAAGAAGCATGTTGCAGTGTGTATTGAGTCCGATTGTGATGAAGAGATCGTTTTCAAGTGGGGGATTCTCTATCAGCAGAGGAAGGCAAGGGATAATCCCTATCTGA 1038 0.4461 MASLGNPRSWVPYMNNKDCSQGFCSLYCPQWCYIVYPPPPPFEFPEDNSSPNFSPLVIAVIGILASALLLVSYYTIISRYCGNPESADRQHHDPSSDELEQFHDRSLHEPWHASRNGLDEALIKSITVCKYKKEDGLVAVSDCSVCLSEFKDDDSIKLLPKCSHAFHIPCIDTWLKSHSSCPLCRASIFTFNGSALLASDSTMENSTFQENQPGNDNNEVVGLAVEEESEVTIQRGTAPKPTLRAMSDLGNLQGRHNVIEIKDEEDVEPFRRSVSMDHSFQSGNRVEEEGSVNEAGPSKRSRGESIKSNSRRSMLQCVLSPIVMKRSFSSGGFSISRGRQGIIPI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4260g00062 345 CDD RING-H2_EL5-like 142 185 - -
Pral4260g00062 345 Pfam Ring finger domain 142 185 IPR001841 -
Pral4260g00062 345 PANTHER RING-H2 FINGER PROTEIN ATL16 41 316 IPR044600 GO:0016567|GO:0016740
Pral4260g00062 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 191 IPR013083 -
Pral4260g00062 345 MobiDBLite consensus disorder prediction 292 307 - -
Pral4260g00062 345 SMART ring_2 143 184 IPR001841 -
Pral4260g00062 345 MobiDBLite consensus disorder prediction 270 311 - -
Pral4260g00062 345 FunFam RING-H2 finger protein ATL54 118 191 - -
Pral4260g00062 345 Coils Coil 345 345 - -
Pral4260g00062 345 SUPERFAMILY RING/U-box 128 191 - -
Pral4260g00062 345 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4260g00062 Pral-Chr4260 446509 448022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4260g00062 1 241 C3H Transcription Factor Family AT3G03550 47.191 1.52e-71 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4260g00062 - - gmx:100792267 453.751