Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4260g00057 ATGGCGCCCGATAGCTTCACCGATAAGAACGTTGTCTTCAGAAAACTGAAGGCGAAGTCCGATAATAAGATGTGTTTCGATTGTAATGCGAAGAATCCAACTTGGGCGTCCATCACTTATGGGATTTTTCTCTGCATCGATTGCTCGGCTGTTCATCGCAGTCTTGGTGTCCACATAAGTTTTGTGAGATCTACGAATTTGGATTCATGGACCCCTGAGCAACTAAGAACGATGAGCTTTGGAGGAAATAATCGTGCACAGGTTTTCTTTAAGCAACATGGTTGGACAGACGGTGGTAAAATAGAGGCCAAGTATACATCTAGAGCTGCAGAGTTGTATAGACAGATTCTTTCGAAGGAAGTTGCTAAAAGTATGGCCGAGGAGGCTGATTTGCCAACATCACCTCTTGCTTCTCAGTCTGTACAAACTTCTAATGGACCTCCTGAGGTTAAAACCAAGGAAGAACCAAAAGAGAACATTGCGGGGAAGACAGAAATGCCTGAAAGCTCTGCATCACCAAGAGCTTCACATGCAATTGTTTCTTCTGCTGTAAAGAAGCCTATTGGTGCAAAAAAACCTGGGAAGAGTGGTCTTGGTGCCCGGAAGCTTTCTAAAAAGCCAAGCGAGTCTCTCTATGAGCAAAAGCCAGAAGAACCACCTGCTCCAGTTTCTTCCTCAGCAAATAGCAGTTTGCTTGCTGGGCCACCCCTGACATCTCGTTTTGAGTATGCTGATGATGTCGAGCCTTCTGAGTCAAACTCTGGAGGGTCTCATCTAATTAGTCATGTGGCTCCACCAAAGTCATCAAGTTTCTTTGCAGATTTTGGAATGGACAGTGGTTTTCCAAAGAAATATGGATCAAATTCCTCAAAAGTGCAAGTTGAAGAATCTGATGAAGCGAGAAGGAAGTTCTCAAATGCTAAATCTATTTCTTCAGCCCAATTCTACGGGGATCAGAACAGAGCCACAGATGTGGATGCTCAAGTTACTCTGTCTAAGTTTTCAGGTTCAGCTGCCATCTCCAGTGCTGATCTTTTTGGCCATTCGGATGACAAATCCTCCATTGATCTCACTGCTAACGACCTCTTAAATCGACTGTCCTTCCAGGCTCAGCAGGATATATCTAACATTAAAAATATTGCGGGGGAGACCGGAAAGAAGCTCAGCTCCCTGGCCTCCAATTTGTTAACGGACCTTCAGGACAGAATTCTTTAA 1215 0.4436 MAPDSFTDKNVVFRKLKAKSDNKMCFDCNAKNPTWASITYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLRTMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMAEEADLPTSPLASQSVQTSNGPPEVKTKEEPKENIAGKTEMPESSASPRASHAIVSSAVKKPIGAKKPGKSGLGARKLSKKPSESLYEQKPEEPPAPVSSSANSSLLAGPPLTSRFEYADDVEPSESNSGGSHLISHVAPPKSSSFFADFGMDSGFPKKYGSNSSKVQVEESDEARRKFSNAKSISSAQFYGDQNRATDVDAQVTLSKFSGSAAISSADLFGHSDDKSSIDLTANDLLNRLSFQAQQDISNIKNIAGETGKKLSSLASNLLTDLQDRIL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4260g00057 404 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Pral4260g00057 404 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Pral4260g00057 404 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Pral4260g00057 404 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Pral4260g00057 404 Pfam Putative GTPase activating protein for Arf 12 106 IPR001164 GO:0005096
Pral4260g00057 404 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Pral4260g00057 404 MobiDBLite consensus disorder prediction 221 235 - -
Pral4260g00057 404 MobiDBLite consensus disorder prediction 133 149 - -
Pral4260g00057 404 SUPERFAMILY ArfGap/RecO-like zinc finger 12 125 IPR037278 -
Pral4260g00057 404 CDD ArfGap_ArfGap2_3_like 8 123 - -
Pral4260g00057 404 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Pral4260g00057 404 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 404 - -
Pral4260g00057 404 Gene3D Arf GTPase activating protein 2 165 IPR038508 -
Pral4260g00057 404 MobiDBLite consensus disorder prediction 128 263 - -
Pral4260g00057 404 MobiDBLite consensus disorder prediction 281 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4260g00057 Pral-Chr4260 397826 401642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4260g00057 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 1.67e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4260g00057 K12493 K11855 gmx:100785169 629.787