Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4260g00052 ATGAATATTTGGACCGACGATAACTCCTCCGTCATGGACGCTTTCATTGGTTCCGATCTATCTTCTCTCTGGCCTCCTCAGCAATCCTCTGCCTCAACGACCACTACCACTGGAACTGACCCCACCAAAGCTTTCTCTCAAAACCATCTTTCGGTTTGCATCTTCAATCAGGAGACTCTCCAGCAACGTCTCCAGGCGCTGATTGAAAAAGCCAGCGAGAGCTGGACCTACGCTATCTTCTGGCAATCTTCTTGTGATCACTCGGGAGCTTCCGTGTTGGGTTGGGGTGATGGCTACTACAAAGGCGAGGAGGAAAAAGGAAAGGGGAAGGCCAAAACGACGGCGTCTTCCGCGGCGGAGCAGGAGCACCGGAAAAAGGTTCTTCGCGAGCTTAATTCGCTCATCTCTGGGTCCTCCTCCTCCCCAGATGACGCTGTAGACGAAGAAGTAACAGATACCGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTTACAACGGCGGCGGATTGCCGGGGCAGGCGTTCCTCAGTTCGAGCCCTGTTTGGGTCGCAGGTTCCGACCGGCTGGTAGCTTCAACATGCGAGAGGGCGAGGCAGGGTCAATTGTTCGGGCTTCAGACTTTGGTTTGTATACCGTCGGCGAGTGGGGTGGTCGAACTAGGCTCCTCGGAGCTGATATTTCAAAACTCTGATCTGATGAATATGGTCAGGGATTTGTTCAATTTCAGTGGCGCCGAAGGGAGTTTTTTATGGGGGTCAAATGCTTCAGCTGCGGCTGATCAGGGTGAGAACGACCCTTCGCTCTGGCTCAACGATCCTTCTGCAATTGAAATTAGGGATTCGGTGACTACTGTTGCCCCCAATTCAGTGCCCAGTTCTACCAACAGTCATAACAATAATCCGAAGCCGATGCAGTTAGACACAAGAGGTTCCACGACTTTAGCTGAGACCCCAAGTTCCATCCATATCCCAAACGCTCACCATAGCCACCAACAACAACGGCAACAGCAGCGTCATTCGCTGAACCAGGGTTGCTTTTCACGGGAGTTGAACTTTTCGGACTATGGATTGGACGGAAGCGGCGTGAAAAACGGTCAATGTCAATTCAATGCTGAGGAGAAGAGGAGGAGGTCGCCTACGTCTAAGGGTAGCAATGACGAAGGCATGCTTTCTTTCACTTCAGGTGTGGTTTTGCCCGCTTCAAATGTGAAGACCGTCTGCGGCGGCGATTCTGATCATTCCGATCTCGAAGCTTCTGCGATGAAGGAGGTAGATAGTAAGGTGGTCGAACCAGAGAAAAAACCTCGGAAGAGAGGACGAAAGCCCGCAAATGGCAGAGAGGAGCCTCTGAATCACGTTGAAGCTGAAAGGCAGAGGAGAGAGAAGCTCAATCAACGGTTCTATGCGCTTCGTGCTGTGGTTCCAAACGTTTCAAAGATGGATAAAGCATCCCTTCTGGGTGATGCCATATCTTATATCTCTGAGCTCAAGTCGAAGCTTCAGAGAACGGAATCAGACAAGAACGAATTGCAGAACCAATTGGATTCTGTGAAGAAGGAACTCGAGCTGGCCCACAAAGGTTCAGCGCCACCTCCACGGGAGAAAGAACCAAAGCCGCCCAATCATCATGCTGGCAAGATTACTGATTTGGATATCGACGTGAAGATCATAGGTTGGGACGCGATGATTCGGATTCAATGCAGCCGGAAGAACCACCCAGCAGCAAGGTTGATGGCGGCATTGAAGGAGCTAGACCTGGATGTGAGCCACGCGAGCGTCTCGGTGATGAATGATTTGATGATCCAACAAGCAACGGTGAGGATGGGGGGTCAATTCTACACGCAGGAGCAACTCTGTTCAGCACTGTCGTCCAAAGTTGGCGATGTCCGATAG 1896 0.5116 MNIWTDDNSSVMDAFIGSDLSSLWPPQQSSASTTTTTGTDPTKAFSQNHLSVCIFNQETLQQRLQALIEKASESWTYAIFWQSSCDHSGASVLGWGDGYYKGEEEKGKGKAKTTASSAAEQEHRKKVLRELNSLISGSSSSPDDAVDEEVTDTEWFFLVSMTQSFYNGGGLPGQAFLSSSPVWVAGSDRLVASTCERARQGQLFGLQTLVCIPSASGVVELGSSELIFQNSDLMNMVRDLFNFSGAEGSFLWGSNASAAADQGENDPSLWLNDPSAIEIRDSVTTVAPNSVPSSTNSHNNNPKPMQLDTRGSTTLAETPSSIHIPNAHHSHQQQRQQQRHSLNQGCFSRELNFSDYGLDGSGVKNGQCQFNAEEKRRRSPTSKGSNDEGMLSFTSGVVLPASNVKTVCGGDSDHSDLEASAMKEVDSKVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYISELKSKLQRTESDKNELQNQLDSVKKELELAHKGSAPPPREKEPKPPNHHAGKITDLDIDVKIIGWDAMIRIQCSRKNHPAARLMAALKELDLDVSHASVSVMNDLMIQQATVRMGGQFYTQEQLCSALSSKVGDVR 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4260g00052 631 Coils Coil 494 528 - -
Pral4260g00052 631 MobiDBLite consensus disorder prediction 358 391 - -
Pral4260g00052 631 PANTHER MYC 46 626 IPR045084 GO:0003700|GO:0006355
Pral4260g00052 631 Gene3D - 440 528 IPR036638 GO:0046983
Pral4260g00052 631 Pfam Helix-loop-helix DNA-binding domain 452 497 IPR011598 GO:0046983
Pral4260g00052 631 FunFam Transcription factor bHLH13 441 515 - -
Pral4260g00052 631 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 451 518 IPR036638 GO:0046983
Pral4260g00052 631 MobiDBLite consensus disorder prediction 286 342 - -
Pral4260g00052 631 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 448 497 IPR011598 GO:0046983
Pral4260g00052 631 MobiDBLite consensus disorder prediction 409 458 - -
Pral4260g00052 631 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 241 IPR025610 -
Pral4260g00052 631 MobiDBLite consensus disorder prediction 526 547 - -
Pral4260g00052 631 MobiDBLite consensus disorder prediction 416 458 - -
Pral4260g00052 631 SMART finulus 454 503 IPR011598 GO:0046983
Pral4260g00052 631 CDD bHLH_AtAIB_like 445 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4260g00052 Pral-Chr4260 369409 371827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4260g00052 2 629 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 54.290 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4260g00052 bHLH-MYC_N 2.1e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4260g00052 K13422 - csav:115717079 724.546