Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4260g00044 ATGTCTCCACTAGTTCTGATTGCTCCGGAGGAAGGGCAGAGCAACACCTCAACAATAACTTCCTCGGATCGTATCTCCCAAAATGTGACTGGATTAAAGGAACGTAATTACCTAGGGTTATCAGATTGTTCATCAGTGGACAGCTCTACTGTTCCAAGCGACTCAGATGAGAAAAAGGACAATCTGAATTTCAAGGCTACAGAATTAAGGTTGGGTCTTCCAGGATCCCAATCGCCTGAAAGGGATGACAGCTCAACAAAACTCAATGAGAAGCCGCTGTTTCCTCTGCTTCCTGCTAAAGATGGAATCTGCTCGTTGTCCCAGAAAACTGTGATTACAGGCAACAAAAGGGGATTCTCTGACACCATGAATGGGTTACCTGAGGGAAAGTTTCTGGGGAATTCGGGTGTAAATGTGCTGCTGTCTCCTAGATCTGCTAGAGCTCAACCAACCACAACAAAAGAAATGCCGACTAAGGTGTTGCAAGAACGACCCTGTGCAACTAACGGAACAGGCCATAAAAAAACGGATGCTTCTGTTGGTGGCAGTGCTCCTGCCTCTAAGGCACAGGTTGTTGGTTGGCCTCCAATAAGATCATTTAGGAAGAACTCATTGGCTGTCACTTCGAAGAACAATGATGAAGTAGATGGAAAACCATGTCCTGCTGCTCTCTTTGTGAAGGTGAGCATGGATGGAGCTCCCTATCTAAGGAAGGTTGATCTTAGGAGTTACAATACATACCAGGATCTGTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTCACTCTAGGTCAATGTGGTTCCCATGGAGCTCCAGGAAGAGAGATGTTGAGTGAGAGCAAGCTGAGGGACCTCCTGCATGGTTCAGAATATGTGCTCACTTATGAAGATAAAGATGGTGATTGGATGCTTGTTGGGGATGTACCATGGGAGATGTTTATTGAGACTTGCAAGAGGCTGAAAATCATGAAAGGTTCTGATGCGATTGGCTTAGCACCCAGGGCTATGGAGAAATCCAGGAGCAGGAGCTAG 1032 0.4612 MSPLVLIAPEEGQSNTSTITSSDRISQNVTGLKERNYLGLSDCSSVDSSTVPSDSDEKKDNLNFKATELRLGLPGSQSPERDDSSTKLNEKPLFPLLPAKDGICSLSQKTVITGNKRGFSDTMNGLPEGKFLGNSGVNVLLSPRSARAQPTTTKEMPTKVLQERPCATNGTGHKKTDASVGGSAPASKAQVVGWPPIRSFRKNSLAVTSKNNDEVDGKPCPAALFVKVSMDGAPYLRKVDLRSYNTYQDLSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLKIMKGSDAIGLAPRAMEKSRSRS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4260g00044 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 62 330 IPR003311 GO:0005634|GO:0006355
Pral4260g00044 343 Pfam AUX/IAA family 67 334 IPR033389 -
Pral4260g00044 343 MobiDBLite consensus disorder prediction 165 188 - -
Pral4260g00044 343 MobiDBLite consensus disorder prediction 1 27 - -
Pral4260g00044 343 Gene3D - 221 336 - -
Pral4260g00044 343 ProSiteProfiles PB1 domain profile. 223 327 IPR000270 GO:0005515
Pral4260g00044 343 MobiDBLite consensus disorder prediction 70 92 - -
Pral4260g00044 343 SUPERFAMILY CAD & PB1 domains 220 324 - -
Pral4260g00044 343 MobiDBLite consensus disorder prediction 9 27 - -
Pral4260g00044 343 FunFam Auxin-responsive protein 219 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4260g00044 Pral-Chr4260 303432 307301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4260g00044 225 328 B3 DNA Binding Superfamily AT5G37020 31.731 3.31e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral4260g00044 AUX_IAA 4e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4260g00044 K14484 - gmx:547502 523.472