Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4260g00042 ATGGAGCTTACACAAGTTGGTTTTCTGGAAGAGTTACTCGCTTCAAGAAGAGGAGACCCATGGAATACTATGTCCTCTGGCTTGAATGAACTCTTCTCTTCTACCTCTTGGAGTTTTGACTCTTTCGATGACAACCTTTCAGCTTTATCTACCTTCAATCCTCCATTTTCTGCACTACCAGCTCCATTTATAGACCCCAGACTTGAATATAATTCCTACCCATTTCTTGATGGCTTCACAGGGAACACTGTTGACTCTGCACCACCACTTCAAGCTCATGAAGATGAAGAGCTTGCCTTTCTGGGTTTTGAGAATCACAGTTCTGAGGAAGGAAATACCAACAATAATGCCAGTAATTGCTGCAAAATCGAAGAACAGGTCATGGAAGCTCCAGTTATCAGCATGGGTGTGTGTTGTGGGGAGAAGAAGCCCAAATTGAAGAGGCTAGAAGGGCAGCCTTCCAAGAATCTCATGGCAGAAAGAAGAAGAAGAAAGCGCCTCAATGATCGCTTGTCCATGCTAAGATCAATCGTCCCCAAGATCAGCAAGATGGACAGGACATCTATTCTTGGAGACACCATAGATTACATGAAGGAGCTTCTGGAAAAGATAAGCAAGTTGCAGGAAGAAATGGAGAAGGAGGGTGAAAATAATCAGTTGAACTTCATGGGCATTTCCAAGGAGGCGAAGCCAAATGAAGTAACGTTTGAGGTTGAGCGGAGAGACCAGGACACGAGGATAAATATCTGCTGTGCCACAAAGCCTGGATTACTACTCTCTACAGTGAATACCTTGGAAGCGTTAGGTCTTGAGATTCAACAATGTGTGATAAGTGGCTTCAACGATTTCACAATGCAAGCATCTTGCTCAGAGGTGGCTGAGCAGAGAACTTGTATTGGCTCTGAAGAGATTAAGGAAGCACTGTTCAGAAATGCAGGTTACGGTGGGAGATGCCTGTAG 960 0.4437 MELTQVGFLEELLASRRGDPWNTMSSGLNELFSSTSWSFDSFDDNLSALSTFNPPFSALPAPFIDPRLEYNSYPFLDGFTGNTVDSAPPLQAHEDEELAFLGFENHSSEEGNTNNNASNCCKIEEQVMEAPVISMGVCCGEKKPKLKRLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKISKLQEEMEKEGENNQLNFMGISKEAKPNEVTFEVERRDQDTRINICCATKPGLLLSTVNTLEALGLEIQQCVISGFNDFTMQASCSEVAEQRTCIGSEEIKEALFRNAGYGGRCL 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4260g00042 319 Gene3D - 146 218 IPR036638 GO:0046983
Pral4260g00042 319 SMART finulus 157 206 IPR011598 GO:0046983
Pral4260g00042 319 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 97 313 - -
Pral4260g00042 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 219 IPR036638 GO:0046983
Pral4260g00042 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Pral4260g00042 319 Coils Coil 194 217 - -
Pral4260g00042 319 Pfam Helix-loop-helix DNA-binding domain 157 200 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4260g00042 Pral-Chr4260 281717 283302 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4260g00042 73 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 54.656 3.06e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4260g00042 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4260g00042 - - gmx:100806571 400.593