Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4260g00041 ATGGAGCTTACACAAGTTGGTTTTCTGGAAGAGTTACTCGCTTCAAGAAGAGGAGACCCATGGAATACTATGTCCTCTGGCTTGAATGAACTCTTCTCTTCTACCTCTTGGAGTTTTGACTCTTTCGATGACAACCTTTCAGCTTTATCTACCTTCAATCCTCCATTTTCTGCACTACCAGCTCCATTTATAGACCCCAGACTTGAATATAATTCCTACCCATTTCTTGATGGCTTCACAGGGAACACTGTTGACTCTGCACCACCACTTCAAGCTCATGAAGATGAAGAGCTTGCCTTTCTGGGTTTTGAGAATCACAGTTCTGAGGAAGGAAATACCAACAATAATGCCAGTAATTGCTGCAAAATCGAAGAACAGGTCATGGAAGCTCCAGTTATCAGCATGGGTGTGTGTTGTGGGGAGAAGAAGCCCAAATTGAAGAGGCTAGAAGGGCAGCCTTCCAAGAATCTCATGGCAGAAAGAAGAAGAAGAAAGCGCCTCAATGATCGCTTGTCCATGCTAAGATCAATCGTCCCCAAGATCAGCAAGATGGACAGGACATCTATTCTTGGAGACACCATAGATTACATGAAGGAGCTTCTGGAAAAGATAAGCAAGTTGCAGGAAGAAATGGAGAAGGAGGGTGAAAATAATCAGTTGAACTTCATGGGCATTTCCAAGGAGGCGAAGCCAAATGAAGTAACGGTGAGAAATTCCCCTAAGTTTGAGGTTGAGCGGAGAGACCAGGACACGAGGATAAATATCTGCTGTGCCACAAAGCCTGGATTACTACTCTCTACAGTGAATACCTTGGAAGCGTTAGGTCTTGAGATTCAACAATGTGTGATAAGTGGCTTCAACGATTTCACAATGCAAGCATCTTGCTCAGAGGTGGCTGAGCAGAGAACTTGTATTGGCTCTGAAGAGATTAAGGAAGCACTGTTCAGAAATGCAGGTTACGGTGGGAGATGCCTGTAG 978 0.4438 MELTQVGFLEELLASRRGDPWNTMSSGLNELFSSTSWSFDSFDDNLSALSTFNPPFSALPAPFIDPRLEYNSYPFLDGFTGNTVDSAPPLQAHEDEELAFLGFENHSSEEGNTNNNASNCCKIEEQVMEAPVISMGVCCGEKKPKLKRLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKISKLQEEMEKEGENNQLNFMGISKEAKPNEVTVRNSPKFEVERRDQDTRINICCATKPGLLLSTVNTLEALGLEIQQCVISGFNDFTMQASCSEVAEQRTCIGSEEIKEALFRNAGYGGRCL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4260g00041 325 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 97 319 - -
Pral4260g00041 325 SMART finulus 157 206 IPR011598 GO:0046983
Pral4260g00041 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Pral4260g00041 325 Coils Coil 194 217 - -
Pral4260g00041 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 219 IPR036638 GO:0046983
Pral4260g00041 325 Pfam Helix-loop-helix DNA-binding domain 157 200 IPR011598 GO:0046983
Pral4260g00041 325 Gene3D - 146 218 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4260g00041 Pral-Chr4260 281717 283302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4260g00041 73 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 55.731 7.91e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4260g00041 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4260g00041 - - gmx:100806571 419.083