Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4260g00032 ATGGGAAGAGGGAAGATTTTGATCAAAAGGATTGACGATACTGCAAGCAGGCAAGTGACTTTCTCGAAAAGGAGAAAGGGATTGATGAAGAAGGCGAGAGAGCTGGCCATTCTTTGTGATGTAGAAGTTGGGCTCCTCATATTCTCCAGCACTGGAAGGCTTCATGAATATGCCAGCACCAGCATAAAATCTGTGGTTGAGAGATACAACAGTTGCAAGGAGGAACATGAACGACTGATGAATCCAGAATCAGAGGTCAAGTTCTGGCAAAGGGAGGCAGAATTATTAACGCAGCAAGTACATAATCTTCAAGAAAACCATAGGAAGTTAATGGGAGAACAGCTTTATGGTTTGAGTGTTAAAAACCTTCTGGAGAATCAACTGGAGATAAGTCTCCGAGGTGTCCGCATGAAAAAGGAACAAATTCTAAAAGAAGAAATCTACCACCTGAGGAGGAAGGGAAACGCTGTCCATCAGCAAAATGTAGAACTCCATAAGAAGGTAAACCTCATTCAACAAGAAAACATGCAGCTATACAATGAGGTTTATGCCACAACAGATGCGGCTGTAGCAAGCAGGAATGCTTTGCTGTCGTATGGTGTGCGTGCAGATCAAGAAGATCCACAAGCAATGACCCAACTTCAGTTATCGCAGCCTGAACCGGAAGCTCACGAGACATCAGGCAGCGCCACAAGATGA 699 0.4421 MGRGKILIKRIDDTASRQVTFSKRRKGLMKKARELAILCDVEVGLLIFSSTGRLHEYASTSIKSVVERYNSCKEEHERLMNPESEVKFWQREAELLTQQVHNLQENHRKLMGEQLYGLSVKNLLENQLEISLRGVRMKKEQILKEEIYHLRRKGNAVHQQNVELHKKVNLIQQENMQLYNEVYATTDAAVASRNALLSYGVRADQEDPQAMTQLQLSQPEPEAHETSGSATR 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4260g00032 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral4260g00032 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4260g00032 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Pral4260g00032 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4260g00032 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4260g00032 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4260g00032 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4260g00032 232 MobiDBLite consensus disorder prediction 207 232 - -
Pral4260g00032 232 Coils Coil 86 113 - -
Pral4260g00032 232 ProSiteProfiles K-box domain profile. 86 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4260g00032 232 Pfam K-box region 83 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4260g00032 232 Gene3D - 13 115 IPR036879 GO:0003677|GO:0046983
Pral4260g00032 232 MobiDBLite consensus disorder prediction 208 232 - -
Pral4260g00032 232 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Pral4260g00032 232 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pral4260g00032 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4260g00032 Pral-Chr4260 219573 226267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4260g00032 1 230 MADS-box Gene Family AT2G22630 56.466 7.06e-88 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4260g00032 K-box 2.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4260g00032 K09264 - qsa:O6P43_025186 317.39