Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4260g00026 ATGAAGAGGAGGGTAGGTGAGATCGTAAGGAAACAAGTTTTCTTGCTGTGGTGGTTTGGAATGACTGTGCAGTTCTGCTTCTTGTTGGGTGCTTCTCTCTCTTATGACACCACCTCATTCAGCAGAAGAGAGTTGAAGGGGATAAACACTTCAAAACCCAGACCTTCAATTTCTGCAGTTAAGCTTAATACAGAAGATCATGGCCACGTGGTGATTGAGAATGGCATTGTTCAAATCACTCTGTCCAGCCCCGAGGGGTATATTCTTGGCATATCATATGATGGAATCGACAATGTACTAGAATCTCGAAACGAAGAACAAGACAGAGGGTATTTTGATGTGGTCTGGAATAAGCCTGGGAACAGCAGCACTTTTCAGAGAATCCATGGGACCGAATTTTCAGTTGTATCATTGGACGAAAACCAAGTGGAGATTTCCTTTGTAAGAACATGGACGCCCTCCCTGGAAGGCTCGAATGTCCCCATAAACATAGACCAAAGGTATGTATTGCGAAGAGGCGATTCTGGGTTTTACTCTTACACAATATTTGAACGCCCAGAAGGATTTCCTGCAGTGGAGGTTGATCAAATCAGGAATGTTTTCAAGCTCCAGGAAGAAAGGTTCGTCTACATGGCTATATCAGACACTAGGCAAAGATACATGCCAACCATGAAAGACAGAGAAACAGGACAACCTCTGGCTTATCCTGAAGCAGTTCTCTTAACCAATCCATCTAATGAAAACTTTAGAGGAGAGGTGGACGACAAATATCAATACTCTTGTGAGAATAAAGACAACAAAGTGCATGGTTGGATTAGCGTTGATGCTGAAGCACCCGTGGGCTTTTGGGTAATAACACCCAGTAACGAGTTTCGCAATGCTGGGCCCATCAAGCAAGACCTTACCTCTCACGTGGGCCCATTTGCCCTCTCTATGTTTGTGAGCACTCACTATGCTGGGAAGGAGGTAACTATGGAATTTCAAGAAGGAGAGACTTACAGGAAGGTTTTCGGCCCCATTTTTGTGTATCTGAACTCTGTTTCAAGCTCTGAGAATCCACTAACACTCTGGACAGATGCCACACAACAAATGTCTAAGGAAGTCAAAAGTTGGCCTTATGATTTCCCAAGATCACAAGCTTACATTCCACCTACCCAACGTGGAAGCGTGGCTGGAAGATTACTGGTTCAAGATTGGTATATCAGAGGAGGCAGATTTCTATATGCTGACTCTGCATATGTTGGTCTGGCTCTTCCTGGTGCTGCAGGATCATGGCAAAGAGAAAGCAAGGGTTATCAATTTTGGACCCAAGCGAACAAGAAGGGCTATTTTGTGATAAACAATGTTGTTCCCGGTGAGTATAACTTGTTTGCATGGGTTCCTGGCTTTATTGGTGATTACAGATACAATGCTACAATAACCATTAGCCCAGGTAGTGTAGTCCAATTGGACTCACTTGTATATAATCCGCCAAGAAGTGGATCCACTGTTTGGGAAATTGGAATCCCAGATCGCTCAGCTGCAGAATTCTATATCCCGGACCCTTACCCTACACTCATGAACAAATTGTACAATGAACAACCCAAAGACAAGTATAGACAATATGGTTTATGGGAACACTATGCTGATTTATATCCAAACAATGATCTAGTCTACACCGTTGGTGTTAGTTCATATGATCAAGACTGGTTCTATGCTCATGTTACAAGGTGA 1713 0.4337 MKRRVGEIVRKQVFLLWWFGMTVQFCFLLGASLSYDTTSFSRRELKGINTSKPRPSISAVKLNTEDHGHVVIENGIVQITLSSPEGYILGISYDGIDNVLESRNEEQDRGYFDVVWNKPGNSSTFQRIHGTEFSVVSLDENQVEISFVRTWTPSLEGSNVPINIDQRYVLRRGDSGFYSYTIFERPEGFPAVEVDQIRNVFKLQEERFVYMAISDTRQRYMPTMKDRETGQPLAYPEAVLLTNPSNENFRGEVDDKYQYSCENKDNKVHGWISVDAEAPVGFWVITPSNEFRNAGPIKQDLTSHVGPFALSMFVSTHYAGKEVTMEFQEGETYRKVFGPIFVYLNSVSSSENPLTLWTDATQQMSKEVKSWPYDFPRSQAYIPPTQRGSVAGRLLVQDWYIRGGRFLYADSAYVGLALPGAAGSWQRESKGYQFWTQANKKGYFVINNVVPGEYNLFAWVPGFIGDYRYNATITISPGSVVQLDSLVYNPPRSGSTVWEIGIPDRSAAEFYIPDPYPTLMNKLYNEQPKDKYRQYGLWEHYADLYPNNDLVYTVGVSSYDQDWFYAHVTR 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4260g00026 570 Gene3D - 62 365 IPR014718 GO:0030246
Pral4260g00026 570 CDD RGL4_N 63 349 - -
Pral4260g00026 570 CDD RGL4_M 386 486 IPR029413 -
Pral4260g00026 570 FunFam Rhamnogalacturonate lyase B 383 483 - -
Pral4260g00026 570 SUPERFAMILY Galactose-binding domain-like 493 570 IPR008979 -
Pral4260g00026 570 Gene3D - 382 485 - -
Pral4260g00026 570 Pfam Rhamnogalacturonate lyase family 59 253 IPR010325 -
Pral4260g00026 570 Pfam Polysaccharide lyase family 4, domain III 496 570 IPR029411 -
Pral4260g00026 570 SUPERFAMILY Galactose mutarotase-like 64 348 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pral4260g00026 570 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 61 570 - -
Pral4260g00026 570 Pfam Polysaccharide lyase family 4, domain II 410 482 IPR029413 -
Pral4260g00026 570 SUPERFAMILY Starch-binding domain-like 382 485 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4260g00026 Pral-Chr4260 137862 142178 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4260g00026 57 570 Polysaccharide Lyase AT1G09890 56.757 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4260g00026 K18195 - gmx:100776664 865.144