Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4260g00025 ATGGACCTGATGACCAGAAGAGAGTTGAAGGGGATAAACACTTCAAAACCCAGACCTTCAATTTCTGCAGTTAAGCTTAATACAGAAGATCATGGCCACGTGGTGATTGAGAATGGCATTGTTCAAATCACTCTGTCCAGCCCCGAGGGGTATATTCTTGGCATATCATATGATGGAATCGACAATGTACTAGAATCTCGAAACGAAGAACAAGACAGAGGGTATTTTGATGTGGTCTGGAATAAGCCTGGGAACAGCAGCACTTTTCAGAGAATCCATGGGACCGAATTTTCAGTTGTATCATTGGACGAAAACCAAGTGGAGATTTCCTTTGTAAGAACATGGACGCCCTCCCTGGAAGGCTCGAATGTCCCCATAAACATAGACCAAAGGTATGTATTGCGAAGAGGCGATTCTGGGTTTTACTCTTACACAATATTTGAACGCCCAGAAGGATTTCCTGCAGTGGAGGTTGATCAAATCAGGAATGTTTTCAAGCTCCAGGAAGAAAGGTTCGTCTACATGGCTATATCAGACACTAGGCAAAGATACATGCCAACCATGAAAGACAGAGAAACAGGACAACCTCTGGCTTATCCTGAAGCAGTTCTCTTAACCAATCCATCTAATGAAAACTTTAGAGGAGAGGTGGACGACAAATATCAATACTCTTGTGAGAATAAAGACAACAAAGTGCATGGTTGGATTAGCGTTGATGCTGAAGCACCCGTGGGCTTTTGGGTAATAACACCCAGTAACGAGTTTCGCAATGCTGGGCCCATCAAGCAAGACCTTACCTCTCACGTGGGCCCATTTGCCCTCTCTATGTTTGTGAGCACTCACTATGCTGGGAAGGAGGTAACTATGGAATTTCAAGAAGGAGAGACTTACAGGAAGGTTTTCGGCCCCATTTTTGTGTATCTGAACTCTGTTTCAAGCTCTGAGAATCCACTAACACTCTGGACAGATGCCACACAACAAATGTCTAAGGAAGTCAAAAGTTGGCCTTATGATTTCCCAAGATCACAAGCTTACATTCCACCTACCCAACGTGGAAGCGTGGCTGGAAGATTACTGGTTCAAGATTGGTATATCAGAGGAGGCAGATTTCTATATGCTGACTCTGCATATGTTGGTCTGGCTCTTCCTGGTGCTGCAGGATCATGGCAAAGAGAAAGCAAGGGTTATCAATTTTGGACCCAAGCGAACAAGAAGGGCTATTTTGTGATAAACAATGTTGTTCCCGGTGAGTATAACTTGTTTGCATGGGTTCCTGGCTTTATTGGTGATTACAGATACAATGCTACAATAACCATTAGCCCAGGTAGTGTAGTCCAATTGGACTCACTTGTATATAATCCGCCAAGAAGTGGATCCACTGTTTGGGAAATTGGAATCCCAGATCGCTCAGCTGCAGAATTCTATATCCCGGACCCTTACCCTACACTCATGAACAAATTGTACAATGAACAACCCAAAGACAAGTATAGACAATATGGTTTATGGGAACACTATGCTGATTTATATCCAAACAATGATCTAGTCTACACCGTTGGTGTTAGTTCATATGATCAAGACTGGTTCTATGCTCATGTTACAAGGAGCACTGGCAATACGACTTACCAGGCAACGACATGGCAGATTAGGTTTAATCTTCCATATGGCCCATTCAAAGGAAATTACACCCTCCAACTAGCCTTAGCCGCAGCCGCTAATTCTGACCTAAAGATTTGGATCAACGGGCAAGGTAACGCTCCTGCACTGTTTGAAACCGGAAAATTTGGAGGGGACAGTGCCATAGCAAGGCACGGAATCCATGGACTGTACTGGTTGTTCAGCATTGATGTTCCCAGCGATGTTTTAATGAAAGGGAATAATACCATCTATTTGCAACAGTCATTTGCCATAAGTCCTTTTCAAGGAGTTATGTATGACTATATACGTTTAGAAAGACCACCAACTCTAAGGACCTGA 1974 0.4341 MDLMTRRELKGINTSKPRPSISAVKLNTEDHGHVVIENGIVQITLSSPEGYILGISYDGIDNVLESRNEEQDRGYFDVVWNKPGNSSTFQRIHGTEFSVVSLDENQVEISFVRTWTPSLEGSNVPINIDQRYVLRRGDSGFYSYTIFERPEGFPAVEVDQIRNVFKLQEERFVYMAISDTRQRYMPTMKDRETGQPLAYPEAVLLTNPSNENFRGEVDDKYQYSCENKDNKVHGWISVDAEAPVGFWVITPSNEFRNAGPIKQDLTSHVGPFALSMFVSTHYAGKEVTMEFQEGETYRKVFGPIFVYLNSVSSSENPLTLWTDATQQMSKEVKSWPYDFPRSQAYIPPTQRGSVAGRLLVQDWYIRGGRFLYADSAYVGLALPGAAGSWQRESKGYQFWTQANKKGYFVINNVVPGEYNLFAWVPGFIGDYRYNATITISPGSVVQLDSLVYNPPRSGSTVWEIGIPDRSAAEFYIPDPYPTLMNKLYNEQPKDKYRQYGLWEHYADLYPNNDLVYTVGVSSYDQDWFYAHVTRSTGNTTYQATTWQIRFNLPYGPFKGNYTLQLALAAAANSDLKIWINGQGNAPALFETGKFGGDSAIARHGIHGLYWLFSIDVPSDVLMKGNNTIYLQQSFAISPFQGVMYDYIRLERPPTLRT 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4260g00025 657 CDD RGL4_M 350 450 IPR029413 -
Pral4260g00025 657 CDD RGL4_N 27 313 - -
Pral4260g00025 657 SUPERFAMILY Galactose mutarotase-like 28 312 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pral4260g00025 657 Gene3D - 457 650 - -
Pral4260g00025 657 CDD RGL4_C 462 650 - -
Pral4260g00025 657 Pfam Rhamnogalacturonate lyase family 23 217 IPR010325 -
Pral4260g00025 657 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 25 653 - -
Pral4260g00025 657 SUPERFAMILY Galactose-binding domain-like 457 650 IPR008979 -
Pral4260g00025 657 Gene3D - 346 449 - -
Pral4260g00025 657 Pfam Polysaccharide lyase family 4, domain III 460 649 IPR029411 -
Pral4260g00025 657 Pfam Polysaccharide lyase family 4, domain II 374 446 IPR029413 -
Pral4260g00025 657 Gene3D - 26 329 IPR014718 GO:0030246
Pral4260g00025 657 FunFam Rhamnogalacturonate lyase B 347 447 - -
Pral4260g00025 657 SUPERFAMILY Starch-binding domain-like 346 449 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4260g00025 Pral-Chr4260 137161 140881 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4260g00025 21 652 Polysaccharide Lyase AT1G09890 55.660 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4260g00025 K18195 - gmx:100776664 988.023