Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4260g00023 ATGAAGAGGAGGGTAGGTGAGATCGTAAGGAAACAAGTTTTCTTGCTGTGGTGGTTTGGAATGACTGTGCAGTTCTGCTTCTTGTTGGGTGCTTCTCTCTCTTATGACACCACCTCATTCAGAAGAGAGTTGAAGGGGATAAACACTTCAAAACCCAGACCTTCAATTTCTGCAGTTAAGCTTAATACAGAAGATCATGGCCACGTGGTGATTGAGAATGGCATTGTTCAAATCACTCTGTCCAGCCCCGAGGGGTATATTCTTGGCATATCATATGATGGAATCGACAATGTACTAGAATCTCGAAACGAAGAACAAGACAGAGGGTATTTTGATGTGGTCTGGAATAAGCCTGGGAACAGCAGCACTTTTCAGAGAATCCATGGGACCGAATTTTCAGTTGTATCATTGGACGAAAACCAAGTGGAGATTTCCTTTGTAAGAACATGGACGCCCTCCCTGGAAGGCTCGAATGTCCCCATAAACATAGACCAAAGGTATGTATTGCGAAGAGGCGATTCTGGGTTTTACTCTTACACAATATTTGAACGCCCAGAAGGATTTCCTGCAGTGGAGGTTGATCAAATCAGGAATGTTTTCAAGCTCCAGGAAGAAAGGTTCGTCTACATGGCTATATCAGACACTAGGCAAAGATACATGCCAACCATGAAAGACAGAGAAACAGGACAACCTCTGGCTTATCCTGAAGCAGTTCTCTTAACCAATCCATCTAATGAAAACTTTAGAGGAGAGGTGGACGACAAATATCAATACTCTTGTGAGAATAAAGACAACAAAGTGCATGGTTGGATTAGCGTTGATGCTGAAGCACCCGTGGGCTTTTGGGTAATAACACCCAGTAACGAGTTTCGCAATGCTGGGCCCATCAAGCAAGACCTTACCTCTCACGTGGGCCCATTTGCCCTCTCTATGTTTGTGAGCACTCACTATGCTGGGAAGGAGGTAACTATGGAATTTCAAGAAGGAGAGACTTACAGGAAGGTTTTCGGCCCCATTTTTGTGTATCTGAACTCTGTTTCAAGCTCTGAGAATCCACTAACACTCTGGACAGATGCCACACAACAAATGTCTAAGGAAGTCAAAAGTTGGCCTTATGATTTCCCAAGATCACAAGCTTACATTCCACCTACCCAACGTGGAAGCGTGGCTGGAAGATTACTGGTTCAAGATTGGTATATCAGAGGAGGCAGATTTCTATATGCTGACTCTGCATATGTTGGTCTGGCTCTTCCTGGTGCTGCAGGATCATGGCAAAGAGAAAGCAAGGGTTATCAATTTTGGACCCAAGCGAACAAGAAGGGCTATTTTGTGATAAACAATGTTGTTCCCGGTGAGTATAACTTGTTTGCATGGGTTCCTGGCTTTATTGGTGATTACAGATACAATGCTACAATAACCATTAGCCCAGGTAGTGTAGTCCAATTGGACTCACTTGTATATAATCCGCCAAGAAGTGGATCCACTGTTTGGGAAATTGGAATCCCAGATCGCTCAGCTGCAGAATTCTATATCCCGGACCCTTACCCTACACTCATGAACAAATTGTACAATGAACAACCCAAAGACAAGTATAGACAATATGGTTTATGGGAACACTATGCTGATTTATATCCAAACAATGATCTAGTCTACACCGTTGGTGTTAGTTCATATGATCAAGACTGGTTCTATGCTCATGTTACAAGGAGCACTGGCAATACGACTTACCAGGCAACGACATGGCAGATTAGGTTTAATCTTCCATATGGCCCATTCAAAGGAAATTACACCCTCCAACTAGCCTTAGCCGCAGCCGCTAATTCTGACCTAAAGATTTGGATCAACGGGCAAGGTAACGCTCCTGCACTGTTTGAAACCGGAAAATTTGGAGGGGACAGTGCCATAGCAAGGCACGGAATCCATGGACTGTACTGGTTGTTCAGCATTGATGTTCCCAGCGATGTTTTAATGAAAGGGAATAATACCATCTATTTGCAACAGTCATTTGCCATAAGTCCTTTTCAAGGAGTTATGTATGACTATATACGTTTAGAAAGACCACCAACTCTAAGGACCTGA 2079 0.4348 MKRRVGEIVRKQVFLLWWFGMTVQFCFLLGASLSYDTTSFRRELKGINTSKPRPSISAVKLNTEDHGHVVIENGIVQITLSSPEGYILGISYDGIDNVLESRNEEQDRGYFDVVWNKPGNSSTFQRIHGTEFSVVSLDENQVEISFVRTWTPSLEGSNVPINIDQRYVLRRGDSGFYSYTIFERPEGFPAVEVDQIRNVFKLQEERFVYMAISDTRQRYMPTMKDRETGQPLAYPEAVLLTNPSNENFRGEVDDKYQYSCENKDNKVHGWISVDAEAPVGFWVITPSNEFRNAGPIKQDLTSHVGPFALSMFVSTHYAGKEVTMEFQEGETYRKVFGPIFVYLNSVSSSENPLTLWTDATQQMSKEVKSWPYDFPRSQAYIPPTQRGSVAGRLLVQDWYIRGGRFLYADSAYVGLALPGAAGSWQRESKGYQFWTQANKKGYFVINNVVPGEYNLFAWVPGFIGDYRYNATITISPGSVVQLDSLVYNPPRSGSTVWEIGIPDRSAAEFYIPDPYPTLMNKLYNEQPKDKYRQYGLWEHYADLYPNNDLVYTVGVSSYDQDWFYAHVTRSTGNTTYQATTWQIRFNLPYGPFKGNYTLQLALAAAANSDLKIWINGQGNAPALFETGKFGGDSAIARHGIHGLYWLFSIDVPSDVLMKGNNTIYLQQSFAISPFQGVMYDYIRLERPPTLRT 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4260g00023 692 Pfam Polysaccharide lyase family 4, domain III 495 684 IPR029411 -
Pral4260g00023 692 Gene3D - 61 364 IPR014718 GO:0030246
Pral4260g00023 692 SUPERFAMILY Starch-binding domain-like 381 484 IPR013784 GO:0030246
Pral4260g00023 692 CDD RGL4_N 62 348 - -
Pral4260g00023 692 CDD RGL4_M 385 485 IPR029413 -
Pral4260g00023 692 Pfam Polysaccharide lyase family 4, domain II 409 481 IPR029413 -
Pral4260g00023 692 Pfam Rhamnogalacturonate lyase family 58 252 IPR010325 -
Pral4260g00023 692 SUPERFAMILY Galactose-binding domain-like 492 685 IPR008979 -
Pral4260g00023 692 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 60 688 - -
Pral4260g00023 692 CDD RGL4_C 497 685 - -
Pral4260g00023 692 Gene3D - 381 484 - -
Pral4260g00023 692 Gene3D - 492 685 - -
Pral4260g00023 692 FunFam Rhamnogalacturonate lyase B 382 482 - -
Pral4260g00023 692 SUPERFAMILY Galactose mutarotase-like 63 347 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4260g00023 Pral-Chr4260 137161 142178 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4260g00023 56 687 Polysaccharide Lyase AT1G09890 55.660 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4260g00023 K18195 - gmx:100776664 1026.54