Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4260g00022 ATGTTGTGGAGAAGTATAAACAGTATTCCAAAACCCAGTTCTGCAGTTAAGCTGAACACAGAACATCACGGGAAAGTGATGATGGACAATGGCATAATCCATGTCACCCTGTCAAGACCAGAGGGGAATGTTGTGGGAATATCATATGAGGGAATCGAAAATGTACTAGAATCTCGCAACGATGAACAAGACAGAGGGTATTTCGATGTAGTTTGGAATAAACAAGGAAAAGACAATAATTATCACCAGAGAATCGAGGGGACAAAGTTTACAATCGTAGCAGAAGAAAAAAATCAAGTGGAGGTTTCGTTCACCACAACATGGACATCTTCCATGGAAGGCAAAAGTGTCCCCATCAACGTAGACCGAAGGTATATATTGCGACGAGGAAGTTCTGGATTTTACTCTTACGTTATATTCGATCGTCCAGAAGGATTTCCAGCAGTCCAGGTTGAGCAAATCAGGACTGTTTACAAGCTTCAGGAAGACAGGTTCCATTATATGGCTATCTCAGACACTAGGCAAAGATACATGCCAACAATGGAAGATAGAAAAAGAGGGAAAACTTTAGCTTATCCTGAAGCTGTTCTCTTAACCAACCCATCCAACGAAATCTTTAAAGGAGAGGTGGACGACAAATACCAGTACGCTTGTGAGAATAAGGACAGCAGAGTACATGGTTGGATTAGCATCAATTCTAATGCAGCCATGGGGTTCTGGTTAATAACACCCAGCAACGAGTTTCGCAATGGCGGGCCCATCAAGCAGGATCTTACTTCTCATGTGGGCCCCTTTACTCTCTCCATGTTTATGAGCATGCACTTGGCTGGGAAGGAGGCAGCCATGGAATTTCAAGAAGGGGAGACCTATAAGAAGGTTTTTGGCCCTGTTTTTGTGTATCTTAACTCCATTTCGAGCAATGCCAATGCACAAACGCTCTGGCGAGATGCTGTACAACAAATGTCGAAGGAAGTCCAAAGCTGGCCTTACGATTTCCCAAAGTCACAAGATTACATTCCACCCACCAAACGTGGAAGTGTGACTGGAAGATTACTGGTTCAAGATCGGTATATCGAAGGAGGCAGGTTCCAAAATGCTAACTCGGCTTATGTTGGTTTAGCTTTGCCTGGTGATGCAGGATCATGGCAAACAGAAAGCAAGGGTTATCAGTTCTGGACTCAAGCTGACAAAGAGGGCTATTTCGCGATAAAGAATGTTATCCCAGGAAAGTATAATTTGTTTGCTTGGGTTCCAGGCTTTATTGGTGATTATAAATATAATACAACAATCACCATCACGCCAGCGTGTCGGATCAAATTAGGTTTTCTTGTATATAGTCCTCCAAGAAATGGTCTTACCGTTTGGGAAATTGGAGTGCCAGATCGGTCAGCAGCAGAATTCTATATCCCGGACGCAAATCATGAACTCCTGAACAAATTATACAACAATCGTCCCGAAGAAAAGTTTAGACAATATGGATTGTGGGAACGCTATGCTGAATTGTATCCAAAAAATGATCTGGTTTACACTGTTGGTGTTGACTCTCATGATAAGGATTGGTTCTTTGCTCATGTTACAAGGAACATAGGAGATAGCAGATATCAGCCAACTACATGGAAGATTAAATTTGAACTTCGAAGACGGAATCTGTTAGTAGGAAATTACACCCTACGACTGGCTTTAGCATCAGCCACTAGTTCTAAATTGCAGGTTTGGATCAATGAGCAAGGTGAGAAGCGTCCCCTATTTCAAACTGGATTGTTAAGAGGAGACAATGCCATAGCAAGGCATGGAATCCATGGACTGTATTGGTTGTTCAGCATCGATGTTCCAAGCGATCGTTTAGTAGAAGGCAACAATACTATCTATTTGAAACAGCCACTTGCCATTAGTCCTTTCCAAGGACTTATGTATGACTATATCCGTCTAGAGAGACCTTCCAATCTAAGAATTTGA 1956 0.4228 MLWRSINSIPKPSSAVKLNTEHHGKVMMDNGIIHVTLSRPEGNVVGISYEGIENVLESRNDEQDRGYFDVVWNKQGKDNNYHQRIEGTKFTIVAEEKNQVEVSFTTTWTSSMEGKSVPINVDRRYILRRGSSGFYSYVIFDRPEGFPAVQVEQIRTVYKLQEDRFHYMAISDTRQRYMPTMEDRKRGKTLAYPEAVLLTNPSNEIFKGEVDDKYQYACENKDSRVHGWISINSNAAMGFWLITPSNEFRNGGPIKQDLTSHVGPFTLSMFMSMHLAGKEAAMEFQEGETYKKVFGPVFVYLNSISSNANAQTLWRDAVQQMSKEVQSWPYDFPKSQDYIPPTKRGSVTGRLLVQDRYIEGGRFQNANSAYVGLALPGDAGSWQTESKGYQFWTQADKEGYFAIKNVIPGKYNLFAWVPGFIGDYKYNTTITITPACRIKLGFLVYSPPRNGLTVWEIGVPDRSAAEFYIPDANHELLNKLYNNRPEEKFRQYGLWERYAELYPKNDLVYTVGVDSHDKDWFFAHVTRNIGDSRYQPTTWKIKFELRRRNLLVGNYTLRLALASATSSKLQVWINEQGEKRPLFQTGLLRGDNAIARHGIHGLYWLFSIDVPSDRLVEGNNTIYLKQPLAISPFQGLMYDYIRLERPSNLRI 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4260g00022 651 FunFam Rhamnogalacturonate lyase B 340 440 - -
Pral4260g00022 651 SUPERFAMILY Starch-binding domain-like 339 442 IPR013784 GO:0030246
Pral4260g00022 651 CDD RGL4_C 455 644 - -
Pral4260g00022 651 CDD RGL4_M 343 441 IPR029413 -
Pral4260g00022 651 CDD RGL4_N 19 303 - -
Pral4260g00022 651 Gene3D - 451 644 - -
Pral4260g00022 651 SUPERFAMILY Galactose mutarotase-like 21 304 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pral4260g00022 651 Pfam Polysaccharide lyase family 4, domain III 453 643 IPR029411 -
Pral4260g00022 651 Gene3D - 339 435 - -
Pral4260g00022 651 Pfam Polysaccharide lyase family 4, domain II 367 439 IPR029413 -
Pral4260g00022 651 Gene3D - 18 320 IPR014718 GO:0030246
Pral4260g00022 651 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 18 647 - -
Pral4260g00022 651 Pfam Rhamnogalacturonate lyase family 13 210 IPR010325 -
Pral4260g00022 651 SUPERFAMILY Galactose-binding domain-like 451 644 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4260g00022 Pral-Chr4260 131303 134757 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4260g00022 14 647 Polysaccharide Lyase AT1G09890 56.113 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4260g00022 K18195 - gmx:100776664 886.715