Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4260g00021 ATGGAGAACGAAGATCAAGTTGAAGTTTCTTTCTTATACACATGGAATTCTTCCTTGCCTTCAGGAAACATCCCAATGAATATAGATATAAGGTATATTTTACGGAGAGGCAGCTCAGGGTTATATTCATATGCCATATTTGAGCGTTCAGAAGATTTTCCTGCAATTCGGGTGGATGTCTTTAGGCTCGCTTACAAGCTCAGCCAAGGCCTGTTCCACTACATGGCTATAACAGACGAAAGGCAGAGAGAAATGCCCACTGCTCAAGATAGATCCAAAGGCCAAACCCTTGATTATCCTGAAGCTGTCCTCTTAACCCATCCTAGCAACCCTGAATTCTTCGGAGAGGTGGATGATAAGTACATGTACTCGGTTGAGAACAAAGACAACAAAGTTAGCGGATGGGTCGCTTTTAACAGTACCAATTCTTCATCAATGGGGTTCTGGATGATTACACCTAGCAACGAATTCCGAAATGGTGGACCTACCAAGCAAAGTCTCACCTGTCATGTTGGTCCTGTCACCCTCAACTCTTTCGTGAGCCCGCACTATGCTGGGTCGAAGGACATATCCATGATATTCAAAGAAGGAGAGACCTACAAGAAGGTATTCGGCCCCACTTTTCTGTACCTCAACACTGTTGCCAACCCCCGTGATTCTCAAACTCTCTGGGACGATGCTAAAAACCAGATGCAAAAGGAAGTTGGAAGCTGGCCGTATGATTTTCCTCAATCAAAAGATTTCATTCCATCCAATCAACGGGGAAAAGTGTCTGGACAATTGCTAATCAGATGGTACCCTACAGGTGTTACATTATTTAACGTTAGTAATGCTTACGTTGGTCTAGCCCTCCCAGGAGATGAAGGATCATGGCAAACAGAAAGCAAGGGTTATCAATTTTGGACCCAAACTGATAGTAGCGGCTTCTTCACTATACAAAATGTTGTGCCCGGGGACTACAACTTGTATGGTTGGGTCCCTGGCATTCTTGGTGATTACAAATATGAGTATGACATTACCATCAAATCAGGAGATGACATCCAATTAGGTCAATTATACTATTGGCCTCCAAGAACTGGTCCTACGGTTTGGGAAATTGGAATTCCTGATCGATCAGCTCAAGAGTTTTATGTGCCCGACCCATATCCTAGTCTCGTTAACAACTTATACCTAGGAAAGCCCAATGACAGGTTTAGACAGTACGGCTTGTGGAAACGTTATACTGAATTATATCCAACTAACGACCTCGTTTACCATGTGGGTGTTAGTGATTATTCCAAAGATTGGTTCTACGCTCAGGTTCCCAGGGACCTAGGAAACAGCACATACAGTGCAACAACATGGGAGATAAGATTTGAACTCCCATTTGTCATTAGAGGAAGTTACACACTACATATTGCCTTAGCATCAACCACTAGTTCTCGCTTAATCGTTTGGGTCAATAAAGGCGGGAATCGTCACCTGAGGTTCAATACAGGATTAAGAGGAGAGGACAATGCGATAGCAAGGCATGGCATCCATGGATTGTATTGGAGATACAACTTTCAAGTACCAAGCTCTCTACTTGTCACAGGAACCAACTCCATTTACCTCACACAACCTAAGGCTAAATCTCCTCTTCAAGGAATTATGTATGACTATATCCGTTTTGAAAGCCCCACGCTTTTTGGCTCTCCTAATCATAATTAA 1689 0.4316 MENEDQVEVSFLYTWNSSLPSGNIPMNIDIRYILRRGSSGLYSYAIFERSEDFPAIRVDVFRLAYKLSQGLFHYMAITDERQREMPTAQDRSKGQTLDYPEAVLLTHPSNPEFFGEVDDKYMYSVENKDNKVSGWVAFNSTNSSSMGFWMITPSNEFRNGGPTKQSLTCHVGPVTLNSFVSPHYAGSKDISMIFKEGETYKKVFGPTFLYLNTVANPRDSQTLWDDAKNQMQKEVGSWPYDFPQSKDFIPSNQRGKVSGQLLIRWYPTGVTLFNVSNAYVGLALPGDEGSWQTESKGYQFWTQTDSSGFFTIQNVVPGDYNLYGWVPGILGDYKYEYDITIKSGDDIQLGQLYYWPPRTGPTVWEIGIPDRSAQEFYVPDPYPSLVNNLYLGKPNDRFRQYGLWKRYTELYPTNDLVYHVGVSDYSKDWFYAQVPRDLGNSTYSATTWEIRFELPFVIRGSYTLHIALASTTSSRLIVWVNKGGNRHLRFNTGLRGEDNAIARHGIHGLYWRYNFQVPSSLLVTGTNSIYLTQPKAKSPLQGIMYDYIRFESPTLFGSPNHN 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4260g00021 562 Gene3D - 14 227 IPR014718 GO:0030246
Pral4260g00021 562 Gene3D - 249 349 - -
Pral4260g00021 562 Pfam Rhamnogalacturonate lyase family 2 117 IPR010325 -
Pral4260g00021 562 SUPERFAMILY Starch-binding domain-like 250 350 IPR013784 GO:0030246
Pral4260g00021 562 Pfam Polysaccharide lyase family 4, domain III 362 549 IPR029411 -
Pral4260g00021 562 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 554 - -
Pral4260g00021 562 CDD RGL4_M 253 352 IPR029413 -
Pral4260g00021 562 SUPERFAMILY Galactose-binding domain-like 360 551 IPR008979 -
Pral4260g00021 562 Gene3D - 359 551 - -
Pral4260g00021 562 Pfam Polysaccharide lyase family 4, domain II 277 348 IPR029413 -
Pral4260g00021 562 CDD RGL4_C 364 551 - -
Pral4260g00021 562 CDD RGL4_N 2 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4260g00021 Pral-Chr4260 123605 132013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4260g00021 2 554 Polysaccharide Lyase AT4G38030 53.381 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4260g00021 K18195 - gmx:100792575 746.888