Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4260g00020 ATGATGGAGAAATTGGGTGTTCAGTTGCAGAAACCACCAAGCTTCTTATTCCTTCAGTGTCGGAAAACAATGAGTGTGCTGCAAGTGTTCTTCTTCTTCTTCTTGCTCGCTGGTTGTTCTGAGATCACCAAATCTAGTGTTGTGCGTAAGATGGAAGACTCTCATCAACCTGTCACGCTACAGCAAAGTGATGACAAGGTGGTGATGTATAATGGGATCGTTAGCGCTACGGTGTCGCGGCCAGACGGCAATTTGATAGGATTATCATATAATGGCATTGATAACCTTCTTGAACCTCTTACTCGTGCTGATAATAGAGGTTATTGGGACTTTTCTTGGAACCCACTTAGTGGCCGCAGTAACTATTACAGATTCAAAGGGACAAAGTTTTCTGTTATAATGGAGAACGAAGATCAAGTTGAAGTTTCTTTCTTATACACATGGAATTCTTCCTTGCCTTCAGGAAACATCCCAATGAATATAGATATAAGGTATATTTTACGGAGAGGCAGCTCAGGGTTATATTCATATGCCATATTTGAGCGTTCAGAAGATTTTCCTGCAATTCGGGTGGATGTCTTTAGGCTCGCTTACAAGCTCAGCCAAGGCCTGTTCCACTACATGGCTATAACAGACGAAAGGCAGAGAGAAATGCCCACTGCTCAAGATAGATCCAAAGGCCAAACCCTTGATTATCCTGAAGCTGTCCTCTTAACCCATCCTAGCAACCCTGAATTCTTCGGAGAGGTGGATGATAAGTACATGTACTCGGTTGAGAACAAAGACAACAAAGTTAGCGGATGGGTCGCTTTTAACAGTACCAATTCTTCATCAATGGGGTTCTGGATGATTACACCTAGCAACGAATTCCGAAATGGTGGACCTACCAAGCAAAGTCTCACCTGTCATGTTGGTCCTGTCACCCTCAACTCTTTCGTGAGCCCGCACTATGCTGGGTCGAAGGACATATCCATGATATTCAAAGAAGGAGAGACCTACAAGAAGGTATTCGGCCCCACTTTTCTGTACCTCAACACTGTTGCCAACCCCCGTGATTCTCAAACTCTCTGGGACGATGCTAAAAACCAGATGCAAAAGGAAGTTGGAAGCTGGCCGTATGATTTTCCTCAATCAAAAGATTTCATTCCATCCAATCAACGGGGAAAAGTGTCTGGACAATTGCTAATCAGATGGTACCCTACAGGTGTTACATTATTTAACGTTAGTAATGCTTACGTTGGTCTAGCCCTCCCAGGAGATGAAGGATCATGGCAAACAGAAAGCAAGGGTTATCAATTTTGGACCCAAACTGATAGTAGCGGCTTCTTCACTATACAAAATGTTGTGCCCGGGGACTACAACTTGTATGGTTGGGTCCCTGGCATTCTTGGTGATTACAAATATGAGTATGACATTACCATCAAATCAGGAGATGACATCCAATTAGGTCAATTATACTATTGGCCTCCAAGAACTGGTCCTACGGTTTGGGAAATTGGAATTCCTGATCGATCAGCTCAAGAGTTTTATGTGCCCGACCCATATCCTAGTCTCGTTAACAACTTATACCTAGGAAAGCCCAATGACAGGTTTAGACAGTACGGCTTGTGGAAACGTTATACTGAATTATATCCAACTAACGACCTCGTTTACCATGTGGGTGTTAGTGATTATTCCAAAGATTGGTTCTACGCTCAGGTTCCCAGGGACCTAGGAAACAGCACATACAGTGCAACAACATGGGAGATAAGATTTGAACTCCCATTTGTCATTAGAGGAAGTTACACACTACATATTGCCTTAGCATCAACCACTAGTTCTCGCTTAATCGTTTGGGTCAATAAAGGCGGGAATCGTCACCTGAGGTTCAATACAGGATTAAGAGGAGAGGACAATGCGATAGCAAGGCATGGCATCCATGGATTGTATTGGAGATACAACTTTCAAGTACCAAGCTCTCTACTTGTCACAGGAACCAACTCCATTTACCTCACACAACCTAAGGCTAAATCTCCTCTTCAAGGAATTATGTATGACTATATCCGTTTTGAAAGCCCCACGCTTTTTGGCTCTCCTAATCATAATTAA 2088 0.431 MMEKLGVQLQKPPSFLFLQCRKTMSVLQVFFFFFLLAGCSEITKSSVVRKMEDSHQPVTLQQSDDKVVMYNGIVSATVSRPDGNLIGLSYNGIDNLLEPLTRADNRGYWDFSWNPLSGRSNYYRFKGTKFSVIMENEDQVEVSFLYTWNSSLPSGNIPMNIDIRYILRRGSSGLYSYAIFERSEDFPAIRVDVFRLAYKLSQGLFHYMAITDERQREMPTAQDRSKGQTLDYPEAVLLTHPSNPEFFGEVDDKYMYSVENKDNKVSGWVAFNSTNSSSMGFWMITPSNEFRNGGPTKQSLTCHVGPVTLNSFVSPHYAGSKDISMIFKEGETYKKVFGPTFLYLNTVANPRDSQTLWDDAKNQMQKEVGSWPYDFPQSKDFIPSNQRGKVSGQLLIRWYPTGVTLFNVSNAYVGLALPGDEGSWQTESKGYQFWTQTDSSGFFTIQNVVPGDYNLYGWVPGILGDYKYEYDITIKSGDDIQLGQLYYWPPRTGPTVWEIGIPDRSAQEFYVPDPYPSLVNNLYLGKPNDRFRQYGLWKRYTELYPTNDLVYHVGVSDYSKDWFYAQVPRDLGNSTYSATTWEIRFELPFVIRGSYTLHIALASTTSSRLIVWVNKGGNRHLRFNTGLRGEDNAIARHGIHGLYWRYNFQVPSSLLVTGTNSIYLTQPKAKSPLQGIMYDYIRFESPTLFGSPNHN 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4260g00020 695 SUPERFAMILY Galactose mutarotase-like 61 351 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pral4260g00020 695 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 60 687 - -
Pral4260g00020 695 SUPERFAMILY Galactose-binding domain-like 493 684 IPR008979 -
Pral4260g00020 695 CDD RGL4_N 63 350 - -
Pral4260g00020 695 CDD RGL4_C 497 684 - -
Pral4260g00020 695 Gene3D - 492 684 - -
Pral4260g00020 695 Gene3D - 58 360 IPR014718 GO:0030246
Pral4260g00020 695 Pfam Rhamnogalacturonate lyase family 54 250 IPR010325 -
Pral4260g00020 695 Pfam Polysaccharide lyase family 4, domain III 495 682 IPR029411 -
Pral4260g00020 695 Pfam Polysaccharide lyase family 4, domain II 410 481 IPR029413 -
Pral4260g00020 695 Gene3D - 382 482 - -
Pral4260g00020 695 SUPERFAMILY Starch-binding domain-like 383 483 IPR013784 GO:0030246
Pral4260g00020 695 CDD RGL4_M 386 485 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4260g00020 Pral-Chr4260 123605 134084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4260g00020 54 687 Polysaccharide Lyase AT1G09890 53.605 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4260g00020 K18195 - gmx:100792575 813.527