Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4259g00004 ATGGCTCGGGCTACTAACTGGCTATCGTTTTCGTTGTCGCCCATGGAAATGCTGAGGTCTACCAACTCGCAGTATCTTCAATACGATGGTGCTTCTGCTGCTCCTCACTACTTGGTCGATAACTTCTATACCAACGGATGGGCAAACCCCAAGCCCCAGGTTCTCTACACACAAGGAGAGCTTAGCGAGAATAAAGAAAGTGAAGCTGCACACAATATGGTGGAATCATCATTTGCCCCAGGTTTCATGGAACCCCAGGATCAGGGCCAGCCAGTGCCAAAACTCGAGGATTTTCTGGGTGATTCTTCGTCGTCTATTATGCGTTACTCTGACAGCCAAACGGATACTCAGGATTCGTCGACCCTGACCCATATATACGACCAGGGCTCGGCTTACTTCGGCGACCAGCAGGATCTGAAAGCCATCGCTGGGTTCCAAGCTTTCTCAACCAACTCGGGCTCCGAAGTGGATGACTCGACCTCCATCGGCAAAACTCAGGCCGCCGGTGGCGAGTTCCCGGCTCACTCGATTGAGTCGTCCGGGAATGAGCTGGCCTTCTCAAGTGGCACCACGGGAACTTTATCCCTCGGCGTCACCCCCCAGTGTGCCGATCAGAAAGCCATTGTCCCGGACTCCGATAGCTCCAAGAAGATGGCCGATACTTTCGGCCAAAGAACTTCGATTTACAGAGGAGTCACCAGACACCGATGGACGGGTAGATATGAAGCGCATCTCTGGGATAACAGCTGTCGAAGAGAGGGTCAGGCCAGGAAAGGGCGTCAAGTGTATTTGGGTGGATATGACAAAGAAGACAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGCCCCACTGCTACCACCAACTTCCCTGTTTCCAGTTATGCAAAGGAGATGGAGGAGATGAAGCATGTAACAAAGCAAGAGTTTATTGCCTCACTGCGAAGAAAAAGTAGCGGGTTTTCTAGGGGAGCGTCTATATACAGGGGCGTGACGAGGCATCACCAACAAGGTAGATGGCAAGCTAGGATTGGCCGTGTTGCAGGGAACAAGGATCTGTACCTTGGAACATTTGCCACTGAAGAGGAAGCGGCAGAGGCATATGATATTGCAGCCATAAAGTTTAGGGGTGCAAATGCTGTGACCAACTTTGAGATGAGTAGATATGACGTTGAGGCCATCATGAATAGTTCTCTTCCCATTGGCGGGGCAGCGAAACGCTTGAAGCTTTCGCTCGAATCCGAGCAGAAAGCGACTCTGAACAATAATAGCCAGCAAATCCAATGCACCAACATGAGTAACAGCATCAACTTCTCACCAATCCAGGCAGTTTCCTCTGTCCCTAGTGCAATCCCATTTTATCCTGCTACTGCATACTATCACCACAACCTCTTGAACGATTTTCACCCTTCTGACGCCGGGGCTGCAGAATCTGCTGTATCTAATCCTTCTGTAACTCCTTATCCTACTGCCCTGCCTGCACCTTCTGAGTTCTTTATATGGCCTCCTCATCAGTCATACTGA 1533 0.5055 MARATNWLSFSLSPMEMLRSTNSQYLQYDGASAAPHYLVDNFYTNGWANPKPQVLYTQGELSENKESEAAHNMVESSFAPGFMEPQDQGQPVPKLEDFLGDSSSSIMRYSDSQTDTQDSSTLTHIYDQGSAYFGDQQDLKAIAGFQAFSTNSGSEVDDSTSIGKTQAAGGEFPAHSIESSGNELAFSSGTTGTLSLGVTPQCADQKAIVPDSDSSKKMADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDKAARAYDLAALKYWGPTATTNFPVSSYAKEMEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMSRYDVEAIMNSSLPIGGAAKRLKLSLESEQKATLNNNSQQIQCTNMSNSINFSPIQAVSSVPSAIPFYPATAYYHHNLLNDFHPSDAGAAESAVSNPSVTPYPTALPAPSEFFIWPPHQSY 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4259g00004 510 PRINTS Ethylene responsive element binding protein signature 229 240 IPR001471 GO:0003700|GO:0006355
Pral4259g00004 510 PRINTS Ethylene responsive element binding protein signature 370 390 IPR001471 GO:0003700|GO:0006355
Pral4259g00004 510 Pfam AP2 domain 228 286 IPR001471 GO:0003700|GO:0006355
Pral4259g00004 510 Pfam AP2 domain 330 380 IPR001471 GO:0003700|GO:0006355
Pral4259g00004 510 SUPERFAMILY DNA-binding domain 329 390 IPR016177 GO:0003677
Pral4259g00004 510 Gene3D AP2/ERF domain 330 390 IPR036955 GO:0003700|GO:0006355
Pral4259g00004 510 Gene3D AP2/ERF domain 228 296 IPR036955 GO:0003700|GO:0006355
Pral4259g00004 510 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 87 428 - -
Pral4259g00004 510 CDD AP2 329 390 IPR001471 GO:0003700|GO:0006355
Pral4259g00004 510 MobiDBLite consensus disorder prediction 153 174 - -
Pral4259g00004 510 CDD AP2 227 296 IPR001471 GO:0003700|GO:0006355
Pral4259g00004 510 FunFam AP2-like ethylene-responsive transcription factor ANT 227 296 - -
Pral4259g00004 510 ProSiteProfiles AP2/ERF domain profile. 330 388 IPR001471 GO:0003700|GO:0006355
Pral4259g00004 510 FunFam AP2-like ethylene-responsive transcription factor 329 390 - -
Pral4259g00004 510 SUPERFAMILY DNA-binding domain 227 296 IPR016177 GO:0003677
Pral4259g00004 510 ProSiteProfiles AP2/ERF domain profile. 228 294 IPR001471 GO:0003700|GO:0006355
Pral4259g00004 510 SMART rav1_2 330 394 IPR001471 GO:0003700|GO:0006355
Pral4259g00004 510 SMART rav1_2 228 300 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4259g00004 Pral-Chr4259 23979 29209 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4259g00004 44 510 AP2-EREBP Transcription Factor Family AT5G10510 57.117 1.05e-175 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pral4259g00004 AP2 6.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4259g00004 K09285 - vvi:100854470 710.679