Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4258g00029 ATGGCGAGGGAGAAAATTCAGATTAGGAAGATCGACAACGCCACGGCGAGGCAGGTGACGTTCTCGAAGCGACGCAGAGGACTCTTCAAGAAAGCTGAGGAGCTCTCAGTTCTCTGCGATGCAGATGTTGCTGTTGTGATCTTCTCCTCCACCGGCAAGCTCTTTCACTACTCTAGTTCAAGCATGAAAAAAATACTAGAAAGGCGTCATTTGCACTCAAAAAACCTCTCGAAGCTGGACCAACCGTCTCTTGAGTTGCAGCTAGTTGAGGACAGCAACTACTCGAGTTTGAGCAAGGAGATTACCGAGAAGACCCGTCAGCTACGGCAAATGAGAGGAGAGGATCTTCAAGGTTTGAATATCGAGGAATTACAGCAACTTGAGACCTCTCTTGAAGCTGGGTTGACCCGTGTAACTGAAACGAAGTCACAGATGATGATGGATGAGATCATTGATCTCGAAAGAAAGGGAATGCAATTAATGGAAGAGAATGAGCGTTTAAAACGTCAGGTGACAGAAATGCCAAGTGAGGAATGTTGTGTTGTGGAAGGTCAGTCATCTGAGTCTGTCGATAATATTTGCTGCACTGGGCATCCTCAAGAATATGATGTCAACTCAGACACGTCCCTCAGATTGGGGCTACCATATTCTGGTTGA 657 0.4642 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVAVVIFSSTGKLFHYSSSSMKKILERRHLHSKNLSKLDQPSLELQLVEDSNYSSLSKEITEKTRQLRQMRGEDLQGLNIEELQQLETSLEAGLTRVTETKSQMMMDEIIDLERKGMQLMEENERLKRQVTEMPSEECCVVEGQSSESVDNICCTGHPQEYDVNSDTSLRLGLPYSG 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4258g00029 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4258g00029 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4258g00029 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4258g00029 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4258g00029 218 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Pral4258g00029 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Pral4258g00029 218 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pral4258g00029 218 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4258g00029 218 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Pral4258g00029 218 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4258g00029 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral4258g00029 218 FunFam Transcription factor, MADS-box 13 83 - -
Pral4258g00029 218 Coils Coil 94 114 - -
Pral4258g00029 218 Coils Coil 150 170 - -
Pral4258g00029 218 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral4258g00029 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4258g00029 Pral-Chr4258 240457 243921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4258g00029 1 218 MADS-box Gene Family AT2G22540 65.145 1.01e-101 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4258g00029 K-box 4.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4258g00029 - - qsu:112018313 318.161