Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4258g00025 ATGCGGATTCAAAATTACTATAACTCGGAAGTATACAAGCTAAGAAGAAGCTTTCCTCGAGGGACTATCTCGGAGACATACAGAAACTCATTCTTAAAACCAAAATCGAAGGCAGAGATCAAGTTACTCGCTGCCAAGAAACACAGTGAAGCAGAGAAGAGACGCAGGATGCGAATCAATGCTCAATATGCCACCCTTCGCACCATCCTCCCCAACTTGGTCAAAATGGACAAGGCATCAGTACTGGCGGAGACTATAAGGCAAGTAAAGGAGCTGAAAAAGAACATATCGGAATTGGAAGCAGCTAGTACGAGTAGTTCAGGTGAGATCACTGTGTTTCCCAGTGCAGTAGACAAGTTGAACTTGGAACACTGTAAAGATGAGGAGGGCCTTGTAAAGGCGACCTTGAGTTGTGAGGATAGGCCAGGGATAATGTCAGCCATTACAAGGGCTCTTAGGTCGGTGAAAGTCAAGGTGGTAAAGGCTGAGATGGTGAATGTAGGAGGGAGAACCAGAAATGTGTTGTGGGTTCAAGGCCTGGAAAAAGGAAATGAAGGGATGGTTGTCCTGAAGAGGACGCTGAAGGCTGTCATGCGCAAGCCATCTTTCAAGATGCATCGTCTGACTCAATAA 633 0.4597 MRIQNYYNSEVYKLRRSFPRGTISETYRNSFLKPKSKAEIKLLAAKKHSEAEKRRRMRINAQYATLRTILPNLVKMDKASVLAETIRQVKELKKNISELEAASTSSSGEITVFPSAVDKLNLEHCKDEEGLVKATLSCEDRPGIMSAITRALRSVKVKVVKAEMVNVGGRTRNVLWVQGLEKGNEGMVVLKRTLKAVMRKPSFKMHRLTQ 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4258g00025 210 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 111 IPR036638 GO:0046983
Pral4258g00025 210 Gene3D - 132 207 - -
Pral4258g00025 210 Pfam Helix-loop-helix DNA-binding domain 46 92 IPR011598 GO:0046983
Pral4258g00025 210 Coils Coil 82 102 - -
Pral4258g00025 210 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 92 IPR011598 GO:0046983
Pral4258g00025 210 Gene3D - 43 102 IPR036638 GO:0046983
Pral4258g00025 210 SMART finulus 49 98 IPR011598 GO:0046983
Pral4258g00025 210 PANTHER TRANSCRIPTION FACTOR BHLH30 34 202 IPR045847 GO:0003700|GO:0006355
Pral4258g00025 210 SUPERFAMILY ACT-like 132 194 IPR045865 -
Pral4258g00025 210 CDD ACT_UUR-ACR-like 135 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4258g00025 Pral-Chr4258 199960 200996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4258g00025 42 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 44.681 3.09e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4258g00025 HLH 5.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4258g00025 - - pcin:129311482 346.665