Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4258g00013 ATGGATTTTGAGGATCAAGAAGAGCAGGAAGAAGAGATGGGTATGGAGTCGCTGGGGATATCTCCCAGAGTGAAAATGCCGACCTCCGCCGGTGCAGGAGAAGCTATGGTGTTTCCTCAACCCACGAGGACTTATTATAACAATAACAGCAAGGGAAGGTATAGAGAGTGCTTGAAGAACCACGCGGTGAGTCTCGGGGGACACGCGCTTGACGGATGTGGGGAGTTTATGCCGGCCGGAGCCGAAGGCACACTCGACGCTCTCAAATGTGCAGCCTGTAACTGCCACCGTAATTTCCACCGCAAAGAGACCGAACCATTTTTGTTAACCCCCCATTACCACCACCAGCAGCCACCGCAGTTCGCGGCAGCTTATTATCGAGCGCCGGCGGGGTACTTACACGTGGCGGGGCAGCATAGGGGAGGGCCGGGGACGCTGGCGTTGCCGTCTACGTCGGGAGGAGGTGGCGGGACACAGAGCACGAGAGACGAGCAGGACGACGACGCTTCGAACCCAAGCGGAGGAGGAGGGTCGTCGAAGAAGAGGTTCAGGACGAAGTTCACGCAGGAACAGAAGGATAAAATGCTGGAACTTGCAGAGAGATTGGGATGGCGGATTCAGAAGCAAGACGAAGAGTTGGTCCAGCAATTCTGTAACGAAGTCGGAGTGAAGCGTCAGGTTCTTAAGGTTTGGATGCACAACAACAAGCACACTGTGGGTAAGAAGCCCTAG 732 0.5519 MDFEDQEEQEEEMGMESLGISPRVKMPTSAGAGEAMVFPQPTRTYYNNNSKGRYRECLKNHAVSLGGHALDGCGEFMPAGAEGTLDALKCAACNCHRNFHRKETEPFLLTPHYHHQQPPQFAAAYYRAPAGYLHVAGQHRGGPGTLALPSTSGGGGGTQSTRDEQDDDASNPSGGGGSSKKRFRTKFTQEQKDKMLELAERLGWRIQKQDEELVQQFCNEVGVKRQVLKVWMHNNKHTVGKKP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4258g00013 243 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 238 - -
Pral4258g00013 243 MobiDBLite consensus disorder prediction 141 184 - -
Pral4258g00013 243 SUPERFAMILY Homeodomain-like 167 241 IPR009057 -
Pral4258g00013 243 MobiDBLite consensus disorder prediction 1 23 - -
Pral4258g00013 243 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 53 103 IPR006456 -
Pral4258g00013 243 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 103 IPR006456 -
Pral4258g00013 243 Pfam ZF-HD protein dimerisation region 53 104 IPR006456 -
Pral4258g00013 243 Gene3D - 164 240 - -
Pral4258g00013 243 NCBIfam homeobox domain, ZF-HD class 180 236 IPR006455 -
Pral4258g00013 243 FunFam Zinc-finger homeodomain protein 2 167 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4258g00013 Pral-Chr4258 137603 138536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4258g00013 1 239 ZF-HD Transcription Factor Family AT4G24660 49.587 1.20e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pral4258g00013 ZF-HD_dimer 6.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4258g00013 - - qsa:O6P43_025228 298.901