Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4256g00001 ATGGAAGAAATCTACGGAGTGCCTTTGTCGGCGGACTACTCTGATAAGGCCCTGATGACGCCGGAGAATCTCATATTCGCCGCTGATTATCATAGTTTTCTCCCGTCCTCCTCCGGCGGCTTCCGTGATCGGGACCCGATGTTCGGATCCGACGACTTGCTTTCTGCCATTACCGAAGCTGAGCCGCCGTCTTTTGGCCCTGAAGTTCAACCTGAAGACGATTCCTCCTCTCTCATCAAAGCTAAAATCGCTTCTCATCCCCGCTACCCTCGTCTGCTCCAAGCTTTCCTCGATTGTCAGAAGGTAGGAGCGCCTCCAGAAATAGCGTGTCTGTTAGACGAAATCCAGCGAGAAAACGATGTTTGTGAGCGAGAAGTTGTTTCCACGTGCGTCGGTGACGATCCCGAGCTCGACGAGTTCATGGAAACCTATTGCGATCTCCTGATAAAGTATAAATCTGACCTTTCCCGGCCTTTTGACGAAGCAACTACTTTCCTCAACGAGATCGAAATCCAGCTCAGTCATCTGTGCTCTGGTGCCTCCGTTCCAACCCTTTCTGATGATGGGGGCATCTCAGGAGAAGAAGATATAAGCGTGGGAGATGGTGAAGCACAAGACGGAGGGTTGCGGGGGGAAGATCGAGAGCTGAAGGATAGGCTTTTAAGTAAGTTTGGGGGTCGGATTAGGAGTTTGAAATTGGAGTTCTCGAAGAAGAAGAAGAAGGGCAAGCTTCCCAAGGAAGCCAGGCAAACGCTTCTTGACTGGTGGAATGTTCATTACAAATGGCCTTACCCTGCGGAAGCTGACAAGATAGCACTGGCAAAGTCGACGGGACTTGATCAGAAGCAAATTAACAATTGGTTTATTAACCAAAGGAAACGTCACTGGAAACCGTCGGAGAATCTGCAATTCTCTGTTACGGATACTCTAACTGGAGACTTCTACTCCGATCATCATCATCATGTATGA 969 0.4933 MEEIYGVPLSADYSDKALMTPENLIFAADYHSFLPSSSGGFRDRDPMFGSDDLLSAITEAEPPSFGPEVQPEDDSSSLIKAKIASHPRYPRLLQAFLDCQKVGAPPEIACLLDEIQRENDVCEREVVSTCVGDDPELDEFMETYCDLLIKYKSDLSRPFDEATTFLNEIEIQLSHLCSGASVPTLSDDGGISGEEDISVGDGEAQDGGLRGEDRELKDRLLSKFGGRIRSLKLEFSKKKKKGKLPKEARQTLLDWWNVHYKWPYPAEADKIALAKSTGLDQKQINNWFINQRKRHWKPSENLQFSVTDTLTGDFYSDHHHHV 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4256g00001 322 SMART HOX_1 237 302 IPR001356 GO:0003677
Pral4256g00001 322 SUPERFAMILY Homeodomain-like 236 308 IPR009057 -
Pral4256g00001 322 SMART KNOX2_2 127 178 IPR005541 GO:0003677|GO:0005634
Pral4256g00001 322 CDD homeodomain 247 299 IPR001356 GO:0003677
Pral4256g00001 322 Gene3D - 234 305 - -
Pral4256g00001 322 SMART ELK_2 215 236 IPR005539 GO:0003677
Pral4256g00001 322 MobiDBLite consensus disorder prediction 189 212 - -
Pral4256g00001 322 ProSitePatterns 'Homeobox' domain signature. 273 296 IPR017970 GO:0000981|GO:0006355
Pral4256g00001 322 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 304 - -
Pral4256g00001 322 Pfam KNOX1 domain 79 120 IPR005540 GO:0003677|GO:0005634
Pral4256g00001 322 Pfam Homeobox KN domain 255 294 IPR008422 GO:0003677|GO:0006355
Pral4256g00001 322 SMART KNOX1_2 77 121 IPR005540 GO:0003677|GO:0005634
Pral4256g00001 322 FunFam Homeobox protein knotted-1-like 2 240 302 - -
Pral4256g00001 322 Pfam KNOX2 domain 130 177 IPR005541 GO:0003677|GO:0005634
Pral4256g00001 322 ProSiteProfiles 'Homeobox' domain profile. 235 298 IPR001356 GO:0003677
Pral4256g00001 322 ProSiteProfiles ELK domain profile. 215 235 IPR005539 GO:0003677
Pral4256g00001 322 Pfam ELK domain 215 236 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4256g00001 Pral-Chr4256 19265 26194 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4256g00001 1 317 Homeobox Transcription Factor Family AT1G23380 64.742 9.79e-142 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pral4256g00001 KNOX2 2.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4256g00001 - - gmx:100803730 461.455