Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4254g00074 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTCGAGGTTGAGTCTTCTGACACCATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGAATCCCACCGGACCAGCAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTAGCCGACTACAACATTCAGAAGGAGTCGACGCTTCACCTCGTGCTCCGTCTCCGTGGTGGAGCCAAGAAGCGTAAGAAGAAGACATACACCAAGCCCAAGAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCCCTGTTCTCCAATTTTACAAGGTTGATGATTCAGGTAAGGTCGTGAGGCTTAGGAAGGAATGTCCCAATTCTGAGTGTGGTGCTGGTACTTTCATGGCCAACCACTTCGATCGCCATTACTGTGGCAAGTGCGGGACTACTTATGTCTACCAGAAGGCCGGTGGTGATTAA 471 0.5096 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLPVLQFYKVDDSGKVVRLRKECPNSECGAGTFMANHFDRHYCGKCGTTYVYQKAGGD 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4254g00074 156 SMART Ribosomal_S27_2 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Pral4254g00074 156 FunFam Ubiquitin-40S ribosomal protein S27a 1 79 - -
Pral4254g00074 156 SMART ubq_7 1 72 IPR000626 GO:0005515
Pral4254g00074 156 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Pral4254g00074 156 SUPERFAMILY Zn-binding ribosomal proteins 100 153 IPR011332 GO:0006412
Pral4254g00074 156 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Pral4254g00074 156 PANTHER UBIQUITIN 1 89 - -
Pral4254g00074 156 Pfam Ribosomal protein S27a 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Pral4254g00074 156 Gene3D - 1 80 - -
Pral4254g00074 156 CDD Ubl_ubiquitin 1 76 - -
Pral4254g00074 156 Gene3D - 81 154 IPR038582 -
Pral4254g00074 156 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Pral4254g00074 156 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Pral4254g00074 156 PRINTS Ubiquitin signature 11 31 IPR019956 -
Pral4254g00074 156 PRINTS Ubiquitin signature 53 74 IPR019956 -
Pral4254g00074 156 PRINTS Ubiquitin signature 32 52 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4254g00074 Pral-Chr4254 474228 475062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4254g00074 1 153 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 91.503 3.92e-89 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4254g00074 K02977 - cpap:110813157 271.937